genome.fa.s5319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005319.1 Hibiscus syriacus cultivar Beakdansim tig00012039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150705

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2976--3015	21	1.9	21	90	10	64	20	7	5	67	1.34
7170--7226	19	3.1	19	73	21	66	50	33	12	3	1.57
7168--7223	18	3.1	17	72	27	53	53	30	12	3	1.55
7315--7341	5	5.4	5	100	0	54	44	37	18	0	1.50
11299--11660	103	3.4	110	80	9	417	34	23	17	24	1.96
35979--36102	3	42.3	3	88	4	182	34	4	0	61	1.15
37732--37789	3	19.7	3	92	3	100	34	1	0	63	1.04
39230--39276	14	3.5	13	80	13	51	40	2	2	55	1.24
39905--39948	17	2.6	17	85	3	54	31	6	0	61	1.22
50602--50646	9	5.0	9	84	10	56	84	0	15	0	0.62
50602--50653	17	3.2	16	86	10	70	82	0	17	0	0.66
50602--50653	8	6.4	8	82	10	61	82	0	17	0	0.66
50982--51028	16	2.7	18	90	9	71	31	6	8	53	1.57
51796--52624	83	10.0	83	97	0	1543	28	14	22	34	1.93
53417--53995	228	2.6	223	89	3	874	37	13	19	28	1.91
53424--53994	113	5.0	113	87	4	819	37	13	20	28	1.91
53927--54064	65	2.1	65	93	0	240	37	11	18	31	1.87
53814--54335	178	2.9	178	97	0	983	36	11	20	30	1.89
54105--54236	65	2.0	64	94	1	228	37	11	18	31	1.87
54170--54435	115	2.3	115	90	3	405	38	10	19	30	1.86
53589--54435	291	2.9	289	74	12	895	37	12	20	29	1.89
54687--54763	3	25.7	3	97	0	145	33	1	0	64	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56220--56266	14	3.5	13	80	13	51	40	2	2	55	1.24
59767--59828	25	2.5	25	94	0	106	45	0	4	50	1.23
61019--61056	18	2.1	18	90	5	58	15	0	5	78	0.91
61918--62013	35	2.7	35	85	0	120	42	22	0	34	1.54
65106--65201	26	3.5	26	73	15	84	38	11	4	45	1.60
65664--65698	14	2.5	14	90	0	52	34	8	11	45	1.71
66020--66107	45	1.9	46	93	2	151	27	25	19	28	1.99
73128--73162	12	2.8	13	91	4	54	45	11	0	42	1.40
73498--73585	45	1.9	46	86	2	124	28	22	18	30	1.97
74434--74475	20	2.2	20	88	12	63	40	0	2	57	1.12
74517--74607	31	2.9	32	73	16	82	42	1	6	49	1.36
74619--74667	22	2.2	22	88	0	71	46	0	2	51	1.12
75469--75527	15	4.1	15	82	6	77	38	3	0	57	1.15
75474--75541	29	2.3	29	92	0	109	41	4	0	54	1.20
75474--75544	14	4.9	14	79	5	70	40	4	0	54	1.20
75633--75699	24	2.8	24	77	13	66	44	1	2	50	1.26
75725--75773	13	3.8	13	80	17	57	59	0	0	40	0.98
75723--75779	27	2.1	29	87	9	84	56	0	0	43	0.99
75757--75808	22	2.4	22	96	0	95	55	3	0	40	1.18
76631--76671	21	2.0	21	90	0	64	53	4	0	41	1.22
87574--87611	2	19.0	2	100	0	76	50	0	0	50	1.00
88361--88416	15	3.6	15	79	9	67	42	12	12	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88364--88414	17	3.1	17	77	11	61	43	11	9	35	1.75
88588--88640	21	2.5	21	93	0	88	28	28	22	20	1.99
88836--88890	13	4.2	13	75	13	58	49	12	3	34	1.59
88876--88973	32	3.0	33	94	2	164	45	15	7	31	1.73
88968--89007	21	1.9	21	94	0	71	47	7	15	30	1.72
91311--91350	12	3.1	12	80	19	53	20	17	15	47	1.83
91310--91349	15	2.9	14	85	14	57	20	17	15	47	1.83
94811--94852	19	2.2	19	86	0	57	35	21	23	19	1.96
95660--95692	14	2.4	14	90	10	50	48	0	0	51	1.00
97396--97421	11	2.4	11	100	0	52	34	15	0	50	1.45
110567--110673	45	2.4	45	84	4	126	28	21	20	28	1.98
110643--110691	19	2.6	19	84	9	57	24	28	20	26	1.99
110727--110777	21	2.4	21	96	0	93	23	23	27	25	2.00
112987--113088	30	3.4	30	93	1	161	31	26	20	21	1.98
113071--113199	63	2.1	62	85	7	181	33	19	20	27	1.96
113074--113201	31	4.1	31	79	9	143	34	20	18	26	1.96
116917--117006	2	45.0	2	97	0	171	50	1	0	48	1.08
117276--117347	30	2.4	30	90	2	110	31	27	19	20	1.97
117276--117374	30	3.3	30	82	2	92	33	27	19	20	1.96
117352--117460	31	3.5	31	81	7	139	34	19	18	27	1.95
117333--117460	31	4.1	31	80	6	132	34	21	17	26	1.96
118353--118397	21	2.1	21	83	0	54	13	24	31	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121355--121399	22	2.0	23	91	4	74	71	4	0	24	1.05
121880--122301	113	3.8	113	88	1	616	29	19	13	37	1.91
121880--122301	225	1.9	224	89	2	659	29	19	13	37	1.91
123124--123178	22	2.5	22	87	0	74	43	9	14	32	1.77
124380--124539	75	2.1	74	87	3	230	30	19	17	32	1.95
130081--130115	6	5.7	6	93	3	52	54	11	14	20	1.70
130280--130366	43	2.0	44	88	2	131	35	25	10	28	1.89
130399--130462	30	2.1	30	94	0	110	17	28	15	39	1.90
132547--132578	15	2.1	16	94	5	57	65	6	0	28	1.16
134008--134049	15	2.6	16	77	11	50	71	0	0	28	0.86
139774--139813	21	1.9	21	84	0	53	7	42	15	35	1.75
140919--141025	45	2.4	45	87	4	144	28	21	20	28	1.98
143108--143155	14	3.4	14	86	11	55	39	2	2	56	1.23
144136--144167	14	2.3	14	100	0	64	68	0	0	31	0.90

Tables:   1

The End!