Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000532.1 Hibiscus syriacus cultivar Beakdansim tig00001027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65517

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9860--9927
34
2.0
34
100
0
136
23
29
23
23
1.99
9865--9938
34
2.2
34
92
0
121
28
27
24
20
1.99
10927--11025
20
4.9
20
93
0
162
47
25
11
16
1.79
15979--16017
20
2.0
20
84
0
51
23
7
23
46
1.78
16176--16215
21
1.9
21
84
0
53
10
22
40
27
1.86
16198--16256
21
2.7
22
82
10
77
22
25
32
20
1.98
16198--16247
23
2.3
23
89
6
77
24
22
36
18
1.95
20074--20116
20
2.2
20
83
8
52
37
4
2
55
1.33
22963--23004
21
2.0
21
85
0
57
21
16
28
33
1.95
23101--23142
4
10.5
4
89
0
66
26
0
2
71
0.98
23309--23389
21
3.9
21
85
0
108
20
35
19
23
1.96
23311--23404
21
4.5
21
80
0
98
22
37
19
21
1.95
23313--23404
42
2.2
42
92
0
148
22
36
18
21
1.95
24707--24862
64
2.4
64
93
2
258
30
1
17
50
1.57
24967--25018
20
2.6
20
93
0
86
42
25
15
17
1.88
25087--25125
20
2.0
20
94
0
69
17
15
23
43
1.87
25840--25928
20
4.6
19
72
12
74
31
10
21
37
1.87
25963--26000
20
1.9
20
94
0
67
26
18
15
39
1.91
26059--26105
19
2.4
20
82
7
60
23
14
31
29
1.95
39134--39481
174
2.0
174
97
0
660
24
18
23
33
1.96
45493--45528
3
12.3
3
88
5
56
63
0
36
0
0.94
47533--47721
85
2.2
85
85
1
263
35
19
20
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49483--49725
85
2.9
84
91
2
378
34
20
16
27
1.95
49483--49786
85
3.6
84
85
3
367
34
20
16
28
1.94
50884--51268
85
4.5
85
84
2
432
28
18
18
34
1.95
52467--52545
38
2.0
42
83
14
105
3
12
5
78
1.05
52723--52778
2
28.0
2
100
0
112
50
0
0
50
1.00
54698--54727
3
9.7
3
92
7
51
0
33
0
66
0.92
59703--59760
31
1.9
30
86
10
82
36
1
25
36
1.67
59983--60043
23
2.7
23
89
0
95
18
26
27
27
1.98
62012--62041
2
15.5
2
93
6
53
53
0
0
46
1.00
62067--62496
214
2.0
214
92
3
724
56
11
11
20
1.65
65142--65219
30
2.7
28
74
16
70
17
15
8
57
1.63
65342--65392
26
2.0
24
88
7
75
15
7
1
74
1.13

Tables:   1

The End!