Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005321.1 Hibiscus syriacus cultivar Beakdansim tig00012041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74477

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
228--270
23
1.9
23
90
4
70
34
18
16
30
1.93
13027--13062
19
1.9
18
94
5
63
38
0
22
38
1.54
13925--13965
18
2.4
17
83
4
55
41
19
19
19
1.91
14545--14626
23
3.6
23
96
0
146
25
20
24
29
1.99
14545--14650
46
2.4
45
85
6
135
26
19
24
29
1.99
15395--15443
21
2.3
21
86
6
64
36
12
20
30
1.89
15410--15449
21
1.9
21
94
0
71
32
12
25
30
1.92
15857--15894
19
2.0
19
90
10
60
36
0
7
55
1.29
19635--19680
20
2.3
21
74
7
51
15
10
2
71
1.23
20218--20257
20
2.0
20
95
4
73
50
10
40
0
1.36
20224--20268
20
2.2
20
88
0
63
60
6
33
0
1.23
20934--21012
40
2.1
39
85
7
108
29
1
7
62
1.31
21166--21210
19
2.4
19
89
10
67
11
20
0
68
1.19
23178--23239
15
4.3
15
69
19
51
24
0
6
69
1.12
23172--23255
42
2.0
43
90
6
136
25
1
5
67
1.20
27723--27777
24
2.5
22
81
16
69
25
27
20
27
1.99
34908--35011
52
2.0
52
96
0
190
19
24
14
42
1.88
35168--35192
2
12.5
2
100
0
50
52
0
0
48
1.00
35818--35917
52
1.9
52
91
0
164
40
12
24
24
1.88
39219--39251
9
3.7
9
95
0
57
45
30
0
24
1.53
42671--42743
32
2.4
30
80
13
85
34
20
17
27
1.95
43641--43681
19
2.2
19
86
0
55
36
19
7
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45810--45834
12
2.1
12
100
0
50
32
16
0
52
1.44
47239--47332
30
3.1
30
81
6
125
34
21
19
25
1.96
49321--49449
64
2.0
64
98
0
249
20
29
14
34
1.93
54091--54189
24
4.2
24
88
6
123
44
18
13
24
1.85
54074--54173
12
8.5
12
63
12
55
47
17
13
23
1.82
54552--54634
29
2.8
30
80
3
80
48
13
0
38
1.42
54744--54801
28
2.0
29
96
3
109
58
6
6
27
1.50
59345--59526
75
2.4
75
85
0
231
40
12
14
32
1.83
59501--59549
23
2.1
23
84
0
62
40
8
14
36
1.75
59427--59625
97
2.0
98
86
0
274
39
11
15
34
1.82
59534--59700
75
2.2
75
84
0
217
40
11
13
34
1.81
59352--59771
172
2.4
173
84
1
529
39
12
14
33
1.83
59753--60039
153
1.9
151
86
2
414
40
10
12
35
1.79
61349--61398
23
2.2
23
85
0
64
42
6
22
30
1.77
61427--61474
23
2.1
23
84
7
62
37
10
18
33
1.85
61315--61473
87
1.9
84
92
4
264
40
12
16
30
1.85
61510--61991
198
2.4
199
81
5
523
30
15
14
38
1.88
65133--66158
201
5.1
198
83
6
1145
30
13
16
39
1.87
65133--66158
405
2.6
397
83
4
1251
30
13
16
39
1.87
67911--67945
18
1.9
18
94
0
61
20
28
2
48
1.63
69060--69112
15
3.5
15
86
0
79
33
3
45
16
1.66
69504--70410
198
4.6
198
91
3
1403
31
15
17
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69477--70411
395
2.4
396
90
2
1450
31
15
17
36
1.90
70552--70602
20
2.6
20
87
3
68
60
9
1
27
1.39
71734--71769
17
2.1
17
100
0
72
30
11
8
50
1.67
72748--72802
24
2.4
24
77
17
64
50
9
0
40
1.34
74028--74086
19
3.1
19
66
9
57
33
15
1
49
1.55

Tables:   1

The End!