genome.fa.s5322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005322.1 Hibiscus syriacus cultivar Beakdansim tig00012045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59363

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6155--6191	13	2.8	13	100	0	74	16	13	40	29	1.86
6919--7002	2	41.5	2	89	2	105	55	1	1	41	1.15
7576--7680	37	2.9	36	90	2	158	34	11	14	40	1.82
9955--10053	27	3.5	28	82	8	121	34	2	13	50	1.53
12291--12318	14	2.0	14	100	0	56	42	0	35	21	1.53
13407--13476	31	2.3	31	87	5	97	18	30	14	37	1.90
14046--14199	73	2.1	74	83	1	202	31	25	20	22	1.98
15480--15527	23	2.1	23	100	0	96	20	25	8	45	1.79
19935--20035	21	4.8	21	74	12	73	22	24	15	36	1.94
24633--24717	21	4.0	21	75	14	66	32	28	17	21	1.96
24666--24717	23	2.4	21	87	6	68	34	28	17	19	1.94
24728--24781	21	2.6	21	90	0	90	40	25	12	20	1.88
29744--33226	870	4.0	870	95	0	6151	27	26	15	31	1.96
34184--34248	23	2.9	23	82	8	73	27	26	23	23	2.00
36195--36236	20	2.1	20	86	0	57	40	16	14	28	1.88
40568--40607	20	2.0	20	95	0	71	32	20	17	30	1.95
40662--40717	20	2.8	20	83	2	69	37	17	7	37	1.78
43230--43272	14	3.0	14	90	6	68	53	0	34	11	1.37
43230--43271	15	2.9	15	92	3	68	54	0	33	11	1.37
44190--44234	20	2.2	20	88	0	63	40	20	20	20	1.92
44243--44355	20	5.6	20	75	8	86	32	22	13	31	1.92
44242--44374	40	3.3	41	77	7	112	33	21	12	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44348--44394	17	2.6	17	83	10	58	29	23	10	36	1.89
44529--44566	16	2.5	15	84	12	51	28	5	0	65	1.14
45293--45346	24	2.2	24	93	0	90	24	18	16	40	1.90
47838--47879	20	2.1	20	86	0	57	47	19	11	21	1.81
48090--48148	29	2.0	30	90	3	93	33	20	0	45	1.51
48092--48155	29	2.2	30	85	2	85	35	23	0	40	1.55
48277--48337	29	2.1	28	88	8	88	19	16	3	60	1.49
48385--48463	23	3.6	22	76	11	90	18	12	10	58	1.62
48373--48469	43	2.2	42	89	7	149	19	10	8	61	1.52
49021--49047	14	1.9	14	100	0	54	44	7	25	22	1.79
49701--49959	116	2.2	116	86	4	351	30	22	9	37	1.86
49741--49960	58	3.8	57	76	11	205	31	23	9	35	1.87
49627--49968	59	5.9	57	72	10	201	31	23	9	35	1.88
56185--56228	21	2.1	21	95	0	79	25	22	22	29	1.99
56779--57028	58	4.3	59	78	10	237	30	23	9	36	1.86
56824--57027	58	3.5	58	80	9	243	29	24	9	36	1.87
56779--57028	117	2.1	118	90	0	378	30	23	9	36	1.86
56696--57037	58	5.9	57	73	12	232	31	23	10	34	1.88
57390--57528	63	2.2	63	77	11	142	25	20	20	33	1.97
57432--57479	19	2.6	18	80	9	53	29	22	18	29	1.98

Tables:   1

The End!