genome.fa.s5323.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005323.1 Hibiscus syriacus cultivar Beakdansim tig00012047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48897

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2843--2885	18	2.4	17	81	11	50	32	0	2	65	1.06
5550--5591	21	2.0	22	85	4	59	23	26	21	28	1.99
10055--10091	19	1.9	19	94	0	65	32	29	16	21	1.95
10121--10190	21	3.4	20	76	9	61	24	21	21	32	1.98
10178--10222	20	2.2	20	92	0	72	42	11	20	26	1.85
10244--10341	20	4.8	20	81	7	126	29	27	20	22	1.98
10219--10341	41	3.0	41	83	7	169	30	27	20	21	1.98
11155--11232	24	3.2	24	96	0	138	20	20	20	38	1.94
11942--11977	17	2.1	17	100	0	72	27	16	11	44	1.82
13245--13351	21	5.1	21	74	0	97	22	17	38	21	1.93
13247--13356	42	2.6	42	81	2	123	23	18	38	20	1.93
13833--13895	20	3.2	20	90	0	90	49	22	12	15	1.79
13863--13930	20	3.4	20	93	0	109	38	25	14	22	1.92
13923--13978	14	3.6	14	74	21	58	39	25	21	14	1.91
13903--13983	33	2.4	33	93	2	135	39	24	19	16	1.91
13995--14149	20	8.3	20	69	15	98	19	21	22	36	1.95
13995--14149	75	2.1	74	91	1	247	19	21	22	36	1.95
16150--16190	20	2.0	20	100	0	82	56	19	14	9	1.66
16534--16606	22	3.3	22	75	9	78	21	12	42	23	1.87
16776--16820	20	2.2	20	92	0	72	26	17	28	26	1.98
16830--16882	20	2.7	20	93	0	88	22	20	16	39	1.92
16956--17002	19	2.4	19	82	3	58	25	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16968--17004	19	1.9	19	94	0	65	21	16	29	32	1.95
17889--17935	13	3.5	13	81	13	60	31	4	0	63	1.13
21540--21662	63	2.0	63	82	6	151	41	8	5	43	1.59
24199--24280	30	2.8	29	71	12	76	45	2	18	34	1.63
27009--27101	18	5.2	18	80	6	91	30	12	11	45	1.78
27009--27100	35	2.6	35	77	6	87	29	13	11	45	1.79
27051--27110	18	3.3	18	88	4	68	28	10	13	48	1.74
29434--29538	34	3.1	34	69	18	83	41	6	3	47	1.48
33246--33457	45	4.7	45	94	0	343	30	13	19	36	1.91
37408--37467	30	2.0	31	83	3	77	26	8	10	55	1.61
38377--38427	20	2.6	20	90	3	77	35	15	5	43	1.71
38799--38849	20	2.6	20	90	3	77	35	15	5	43	1.71
38103--38954	422	2.0	422	98	0	1650	30	25	15	28	1.95
39273--39322	19	2.6	20	84	12	61	24	12	0	64	1.27
42990--43040	20	2.6	20	90	3	77	35	15	5	43	1.71
43463--43512	19	2.6	20	84	12	61	24	12	0	64	1.27
46395--46558	12	13.2	12	73	22	69	76	0	15	7	1.01
46385--46424	18	2.1	20	86	9	57	75	0	17	7	1.03
46372--46545	53	3.2	54	77	15	171	75	0	17	7	1.03
46418--46575	58	2.7	57	77	20	143	76	0	15	8	1.00
46412--46539	7	17.9	7	67	22	70	77	0	15	7	0.97
46573--46657	45	1.9	44	85	2	116	36	17	29	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47839--47911	37	2.0	37	86	0	101	38	20	20	20	1.94
47907--48234	55	6.0	55	80	7	237	29	15	24	30	1.95
47928--48239	110	2.8	109	82	5	360	28	15	25	30	1.96

Tables:   1

The End!