Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005325.1 Hibiscus syriacus cultivar Beakdansim tig00012055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78677

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6250--6283
17
2.1
16
88
5
50
76
0
8
14
1.01
7943--8276
103
3.2
102
83
3
411
22
19
23
33
1.97
9043--9119
22
3.5
22
87
3
102
23
14
24
37
1.92
9512--9858
172
2.0
173
92
6
578
25
17
20
36
1.94
9895--9962
16
4.3
15
75
15
66
1
14
7
76
1.07
9894--9963
24
3.0
22
74
13
68
1
14
8
75
1.10
14502--14572
12
5.9
12
76
17
76
76
0
7
16
1.00
14497--14574
4
19.2
4
72
17
54
74
0
7
17
1.05
14663--14707
2
22.5
2
100
0
90
51
0
0
48
1.00
14870--14908
19
2.0
21
85
10
55
64
0
0
35
0.94
14862--14937
22
3.5
21
71
15
64
67
2
2
27
1.18
14918--14967
23
2.1
24
81
7
57
58
0
8
34
1.28
15441--15522
37
2.2
38
82
4
96
35
10
14
39
1.82
16906--17296
131
3.0
131
90
1
622
25
14
19
40
1.89
22801--22825
3
8.3
3
100
0
50
0
0
32
68
0.90
25700--25734
15
2.3
15
95
0
61
14
20
34
31
1.92
27406--27441
12
3.0
12
87
0
54
30
8
25
36
1.85
34223--34258
12
3.0
12
87
0
54
30
8
25
36
1.85
47117--47221
49
2.1
50
94
5
185
49
9
17
23
1.75
48580--48612
15
2.3
15
89
5
50
66
6
0
27
1.15
49277--49309
2
16.5
2
100
0
66
51
0
0
48
1.00
51347--51388
21
2.0
21
81
9
50
26
11
23
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53042--53158
36
3.2
36
83
1
153
34
14
17
33
1.91
54851--54913
31
2.0
31
93
0
108
33
9
28
28
1.88
55477--55594
36
3.2
36
87
1
173
34
12
17
34
1.88
63983--64050
34
2.0
34
97
0
127
30
45
0
23
1.53
65143--65343
98
2.0
100
92
1
334
40
17
19
22
1.91
71677--71719
22
2.0
22
90
0
68
34
16
9
39
1.80
75442--75499
26
2.3
25
88
5
82
53
3
5
37
1.40
75636--75697
32
2.0
32
87
6
92
38
4
1
54
1.31

Tables:   1

The End!