genome.fa.s5326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005326.1 Hibiscus syriacus cultivar Beakdansim tig00012057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92809

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049--1104	20	2.8	20	76	17	62	69	0	3	26	1.04
1293--1333	16	2.6	16	84	0	55	70	0	2	26	0.99
1354--1390	17	2.2	16	90	4	56	64	2	5	27	1.28
2092--2137	21	2.2	21	96	0	83	32	19	34	13	1.90
2131--2207	21	3.7	21	82	0	100	25	19	33	20	1.96
4322--4376	20	2.8	19	83	8	74	47	21	16	14	1.82
7228--7299	26	2.7	27	82	6	94	27	4	8	59	1.45
8438--8817	143	2.7	141	85	6	482	18	28	11	41	1.86
14851--14884	12	2.8	12	90	0	50	55	29	0	14	1.40
17652--17715	20	3.2	20	77	0	83	21	21	21	34	1.97
17770--17927	64	2.5	64	91	1	244	50	16	1	31	1.53
19292--19388	21	4.6	21	82	0	131	22	19	36	21	1.95
19292--19385	42	2.2	42	90	3	145	22	20	36	21	1.95
19292--19431	21	6.7	21	76	7	124	25	19	34	21	1.96
19293--19430	63	2.2	63	84	2	179	24	18	34	21	1.96
19575--19618	23	1.9	23	90	0	70	68	2	2	27	1.14
19575--19619	4	11.5	4	80	4	56	68	2	2	26	1.12
19578--19614	19	1.9	19	88	0	56	64	2	2	29	1.21
21627--21657	14	2.2	14	94	0	53	6	19	25	48	1.72
21640--21683	20	2.2	20	83	0	52	13	11	22	52	1.72
22241--22287	20	2.3	20	88	0	67	27	14	27	29	1.96
24049--24132	37	2.3	37	89	0	123	32	17	8	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25276--25306	2	15.5	2	100	0	62	51	0	0	48	1.00
26949--27226	154	1.8	149	87	7	414	45	13	14	26	1.82
39463--39492	7	4.1	7	91	8	51	13	13	13	60	1.60
39463--39492	15	2.1	14	93	6	51	13	13	13	60	1.60
40636--40715	24	3.5	24	74	19	80	77	7	15	0	0.98
40639--40702	32	2.0	31	84	6	83	78	7	14	0	0.96
40649--40706	8	6.9	9	74	20	54	77	6	15	0	0.97
42258--43347	106	10.3	106	88	3	1511	33	24	18	22	1.97
44046--44150	37	2.8	37	80	0	120	41	14	11	32	1.81
44751--44801	2	25.5	2	95	0	93	47	0	1	50	1.12
45931--45984	20	2.7	19	75	8	63	33	31	18	16	1.93
46095--46227	20	6.6	20	81	5	151	36	24	19	19	1.95
46095--46227	40	3.3	40	86	2	176	36	24	19	19	1.95
46034--46227	101	1.9	101	80	4	221	36	24	19	20	1.95
46095--46225	60	2.1	62	83	8	171	36	24	19	19	1.95
46786--46864	20	3.9	21	86	5	94	51	17	18	11	1.75
46786--46907	20	6.5	19	75	13	92	49	21	18	10	1.78
46908--46999	33	2.8	33	86	1	121	13	21	21	43	1.86
46903--46967	19	3.7	19	68	19	59	13	21	21	43	1.87
48681--49025	94	3.9	83	79	14	377	22	12	17	46	1.81
48747--49041	94	3.2	93	93	0	491	20	11	18	49	1.78
49119--49160	17	2.3	18	88	8	59	42	21	23	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49096--49160	19	3.4	18	77	12	60	41	20	21	16	1.90
49149--49188	14	2.9	14	88	0	62	47	25	20	7	1.75
49200--49320	19	6.8	19	68	19	91	11	22	19	46	1.82
49203--49296	33	2.8	33	91	0	161	10	23	20	45	1.82
49269--49320	21	2.6	20	78	6	61	13	19	21	46	1.84
49717--49809	42	2.2	42	80	0	105	21	37	16	24	1.93
51190--51226	14	2.6	14	86	0	56	32	2	21	43	1.67
51333--51424	19	5.4	19	65	24	69	46	17	20	15	1.84
51333--51445	33	3.4	33	92	0	172	46	19	20	13	1.83
51458--51621	33	4.8	33	75	10	166	15	19	18	45	1.85
51509--51555	20	2.3	20	85	7	60	19	19	23	38	1.93
54152--54198	24	2.0	24	95	0	85	34	17	21	27	1.95
54156--54207	24	2.2	24	85	0	68	36	19	19	25	1.95
55058--55108	20	2.5	20	87	6	68	35	21	19	23	1.96
55103--55285	20	9.0	20	75	10	113	20	18	23	37	1.94
55115--55223	20	5.3	20	81	8	130	21	18	24	35	1.95
55115--55223	41	2.7	40	83	7	139	21	18	24	35	1.95
55115--55245	41	3.2	41	81	7	126	22	18	24	35	1.96
55110--55246	61	2.2	60	81	6	159	22	18	24	34	1.96
60062--60101	12	3.3	12	82	0	53	15	17	17	50	1.79
60036--60140	24	4.4	23	79	4	102	22	10	16	50	1.75
61307--61356	22	2.2	22	85	7	64	60	2	0	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62185--62211	13	2.1	13	100	0	54	7	25	22	44	1.79
63997--64146	81	1.8	82	85	1	212	32	20	18	29	1.96
63986--64334	41	8.4	41	68	10	172	30	18	17	32	1.94
64006--64309	84	3.7	82	78	5	263	31	19	17	31	1.95
68788--68846	21	2.8	21	84	0	73	18	5	20	55	1.61
68994--69228	43	5.5	43	86	1	292	27	22	20	28	1.99
73170--73236	29	2.3	29	79	5	82	59	7	8	23	1.53
73430--73519	2	45.0	2	100	0	180	50	0	0	50	1.00
74361--74434	37	2.0	37	84	7	98	47	2	1	48	1.24
78214--78247	15	2.3	15	94	0	59	8	70	14	5	1.31
86636--86772	72	1.9	75	86	4	199	32	18	2	46	1.61
87802--87867	32	2.1	32	85	0	87	42	9	9	39	1.68

Tables:   1

The End!