Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005327.1 Hibiscus syriacus cultivar Beakdansim tig00012064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76676

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3262--3303
21
2.0
22
85
4
59
28
21
26
23
1.99
13239--13286
24
2.0
23
84
4
60
41
4
0
54
1.20
13619--13735
59
2.0
59
81
5
137
34
19
4
41
1.71
16805--16868
21
3.0
21
79
4
74
26
20
25
28
1.99
17864--17921
30
1.9
30
96
0
107
32
1
18
46
1.60
18005--18103
21
4.7
21
79
12
105
24
33
17
25
1.96
18522--18592
34
2.1
33
89
2
106
32
15
29
22
1.95
19374--19421
19
2.5
20
82
3
62
52
6
12
29
1.63
20694--20751
30
1.9
30
96
0
107
32
1
18
46
1.60
20835--20933
21
4.7
21
80
12
114
24
34
17
24
1.96
32844--32895
16
3.2
16
97
0
95
28
5
15
50
1.67
45658--45717
3
20.7
3
80
16
65
70
0
3
26
1.03
45654--45723
24
2.8
24
83
14
81
71
0
2
25
1.00
45796--45861
32
2.1
32
91
0
105
43
6
3
46
1.43
45840--46097
34
7.2
36
77
11
235
44
6
3
45
1.47
45914--46097
70
2.6
68
84
5
233
44
6
3
45
1.47
46706--47431
85
8.7
85
84
4
867
23
21
25
29
1.99
46706--47431
335
2.2
332
89
1
1107
23
21
25
29
1.99
50299--50332
17
1.9
17
88
5
50
64
0
14
20
1.28
58496--58539
17
2.6
17
85
7
54
11
0
29
59
1.32
58782--58845
30
2.1
31
94
5
112
43
3
15
37
1.63
59152--59357
76
2.7
76
88
1
290
24
32
23
19
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61251--61317
25
2.7
25
84
13
77
67
0
2
29
1.06
61380--61447
32
2.1
33
78
8
77
52
8
0
38
1.33
61433--61687
37
7.1
36
77
11
231
43
6
3
45
1.47
61478--61690
74
2.9
74
84
6
265
45
6
3
45
1.46
61736--61763
7
4.0
7
100
0
56
85
0
14
0
0.59
62942--63090
39
3.7
39
84
5
190
30
26
22
20
1.98
63739--63797
24
2.6
22
80
12
66
62
0
6
30
1.21

Tables:   1

The End!