Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005328.1 Hibiscus syriacus cultivar Beakdansim tig00012065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115943

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3856--3882
4
6.8
4
100
0
54
51
22
0
25
1.48
14070--14109
20
1.9
22
90
10
66
40
40
10
10
1.72
14321--14393
34
2.1
34
82
5
85
35
15
24
24
1.94
17237--17295
23
2.7
22
87
10
77
30
28
16
23
1.97
18242--18286
22
2.0
22
100
0
90
35
17
0
46
1.49
19150--19189
21
1.9
21
94
0
71
32
30
15
22
1.94
19215--19253
19
2.1
19
95
0
69
20
38
15
25
1.92
19150--19314
64
2.5
65
84
6
192
32
25
15
26
1.96
19150--19359
64
3.2
63
80
7
181
31
25
15
27
1.96
24148--24189
22
2.0
22
85
4
59
28
35
28
7
1.84
24892--25212
103
3.1
103
98
0
624
26
13
23
36
1.92
25219--25296
23
3.3
23
81
1
93
24
20
23
32
1.98
30044--30086
22
1.9
22
85
4
59
34
34
20
9
1.85
30781--31101
103
3.1
103
98
0
615
26
12
23
37
1.91
31108--31227
47
2.6
47
91
1
197
24
22
22
30
1.99
31108--31232
23
5.3
23
78
2
133
24
21
22
31
1.98
33547--33626
24
3.5
22
78
14
92
23
25
23
27
2.00
36247--36285
19
2.1
19
95
0
69
20
38
15
25
1.92
36204--36411
64
3.2
65
80
8
212
30
25
15
27
1.96
36363--36411
19
2.6
19
84
9
57
24
30
18
26
1.98
38252--38289
19
2.0
19
100
0
76
15
36
15
31
1.90
39699--39810
15
7.6
14
71
11
80
5
12
45
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39697--39812
60
1.9
60
91
0
187
6
12
45
36
1.66
39697--39812
30
3.9
30
88
0
169
6
12
45
36
1.66
75794--75892
26
3.7
27
76
9
112
44
8
1
46
1.39
76141--76381
128
1.9
128
93
0
419
33
6
27
32
1.83
76578--76674
32
3.1
31
82
7
106
44
10
10
35
1.73
76590--76674
32
2.7
32
85
1
109
43
9
9
37
1.69
80522--80583
32
1.9
32
90
6
99
29
17
12
40
1.87
80573--80641
34
2.0
35
83
8
88
31
13
11
43
1.79
81712--81834
61
2.0
61
87
3
176
37
21
14
26
1.92
84178--84203
12
2.2
12
100
0
52
53
0
0
46
1.00
84249--84335
43
1.9
45
81
11
106
47
2
2
48
1.27
84748--84785
2
19.0
2
100
0
76
50
0
0
50
1.00
84936--84979
22
2.0
22
82
8
54
52
20
2
25
1.58
95941--96007
2
33.5
2
93
0
116
53
0
0
46
1.00
98966--99022
24
2.6
22
86
13
75
22
22
21
33
1.97
99073--99125
19
2.8
19
100
0
106
22
33
16
26
1.96
106281--106784
127
4.0
127
94
0
857
43
4
4
47
1.44

Tables:   1

The End!