Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000533.1 Hibiscus syriacus cultivar Beakdansim tig00001028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60067

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1234--1269
14
2.6
14
100
0
72
30
0
22
47
1.52
1172--1314
76
1.9
76
92
4
245
28
2
16
51
1.59
1402--1462
20
3.0
20
90
0
95
47
22
18
11
1.80
1452--1704
20
13.6
20
73
15
195
24
18
22
34
1.96
1543--1696
54
2.9
54
92
0
245
22
16
25
35
1.94
4132--4184
23
2.3
23
87
9
72
41
20
16
20
1.90
4834--4871
17
2.2
17
100
0
76
26
5
36
31
1.79
4831--4881
17
2.6
20
76
23
63
25
7
39
27
1.83
5019--5065
20
2.3
20
96
0
85
23
21
29
25
1.99
5139--5184
19
2.4
19
88
3
65
23
17
28
30
1.97
5148--5186
19
2.1
19
95
0
69
23
15
28
33
1.95
16145--16176
15
2.1
15
94
0
55
28
21
18
31
1.97
21460--21529
14
5.0
14
76
10
63
31
4
1
62
1.23
21460--21519
17
3.4
17
80
14
68
28
5
1
65
1.23
21460--21497
3
13.3
3
89
10
62
31
0
0
68
0.90
23106--23136
2
15.5
2
100
0
62
51
0
0
48
1.00
23487--23612
60
2.2
55
80
8
137
26
7
9
55
1.59
28919--28986
4
17.2
4
74
19
63
52
22
0
25
1.47
28919--28986
16
4.3
16
90
1
111
52
22
0
25
1.47
29271--29372
35
3.0
34
84
4
125
29
20
13
36
1.91
29339--29535
105
1.9
105
87
4
290
29
20
10
39
1.86
29857--29958
28
3.6
27
81
11
116
27
11
13
47
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29873--29958
29
3.0
29
86
8
122
27
11
12
47
1.76
29913--30050
62
2.2
63
81
11
151
31
14
10
42
1.80
30166--30208
14
3.0
14
89
3
59
32
20
4
41
1.73
30633--30997
40
8.6
40
70
16
211
25
31
18
24
1.97
30633--30965
128
2.6
129
94
1
589
25
31
18
24
1.98
31148--31177
3
10.3
3
92
7
53
30
0
0
70
0.88
33158--33282
59
2.2
55
81
7
144
26
8
9
56
1.59
37484--37526
16
2.7
16
96
0
77
41
23
16
18
1.89
40111--40174
29
2.2
29
82
0
74
34
6
6
53
1.51
40957--41360
207
1.9
207
91
4
661
39
9
4
46
1.57
45528--45650
46
2.7
46
87
3
169
30
19
19
30
1.96
46298--46369
2
36.0
2
100
0
144
50
0
0
50
1.00
54214--54249
18
2.1
18
89
5
56
27
16
22
33
1.95
54215--54374
65
2.5
65
86
5
209
27
17
23
31
1.97
54215--54422
65
3.2
64
82
8
199
25
16
24
32
1.96
58828--58875
21
2.3
21
85
7
62
31
2
10
56
1.45

Tables:   1

The End!