Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005333.1 Hibiscus syriacus cultivar Beakdansim tig00012077_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66248
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Found at i:8324 original size:20 final size:20
Alignment explanation
Indices: 8299--8343 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
8289 GTCATCCATT
8299 TTTTTAAAC-CTCAAACCGGA
1 TTTTTAAACTCT-AAACCGGA
*
8319 TTTTTAAACTCTAGACCGGA
1 TTTTTAAACTCTAAACCGGA
8339 TTTTT
1 TTTTT
8344 TTTCGGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (20 bp):
TTTTTAAACTCTAAACCGGA
Found at i:12796 original size:15 final size:16
Alignment explanation
Indices: 12771--12804 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
12761 CTTTACCCAC
12771 AAAAAGAAAAGAAATA
1 AAAAAGAAAAGAAATA
*
12787 AAAAAG-AAAGGAATA
1 AAAAAGAAAAGAAATA
12802 AAA
1 AAA
12805 CCCAAGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (16 bp):
AAAAAGAAAAGAAATA
Found at i:14238 original size:17 final size:19
Alignment explanation
Indices: 14203--14239 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
14193 ATACAAAAGA
14203 AATTTCTAAATTATATGTG
1 AATTTCTAAATTATATGTG
14222 AATTT-TAAATT-TATGTG
1 AATTTCTAAATTATATGTG
14239 A
1 A
14240 GTGTGACCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 6 0.33
19 5 0.28
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.49
Consensus pattern (19 bp):
AATTTCTAAATTATATGTG
Found at i:17190 original size:83 final size:83
Alignment explanation
Indices: 17051--17289 Score: 451
Period size: 83 Copynumber: 2.9 Consensus size: 83
17041 ACTGCAACAC
17051 GATGAACAAAGAAATGCGATGAACTCATGCAGTGAATTGGCTTTGAAACCATGAACGTGTCCATT
1 GATGAACAAAGAAATGCGATGAACTCATGCAGTGAATTGGCTTTGAAACCATGAACGTGTCCATT
17116 TCTGCAACACTCCTACAT
66 TCTGCAACACTCCTACAT
17134 GATGAACAAAGAAATGCGATGAACTCATGCAGTGAATTGGCTTTGAAACCATGAACGTGTCCATT
1 GATGAACAAAGAAATGCGATGAACTCATGCAGTGAATTGGCTTTGAAACCATGAACGTGTCCATT
17199 TCTGCAACACTCCTACAT
66 TCTGCAACACTCCTACAT
* * *
17217 GATGAACAAAGAAATGCGATGAACTCATGCAGTGAATTGGCTTTGAAACCAAGAATGTGTCCGTT
1 GATGAACAAAGAAATGCGATGAACTCATGCAGTGAATTGGCTTTGAAACCATGAACGTGTCCATT
17282 TCTGCAAC
66 TCTGCAAC
17290 GAAAATGGTG
Statistics
Matches: 153, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 153 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (83 bp):
GATGAACAAAGAAATGCGATGAACTCATGCAGTGAATTGGCTTTGAAACCATGAACGTGTCCATT
TCTGCAACACTCCTACAT
Found at i:19418 original size:11 final size:10
Alignment explanation
Indices: 19397--19422 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
19387 AGTTTTACAC
19397 AAAAAAGAAA
1 AAAAAAGAAA
19407 AAAAAAGAAA
1 AAAAAAGAAA
19417 AAAAAA
1 AAAAAA
19423 TGAATCCGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:23052 original size:20 final size:21
Alignment explanation
Indices: 23023--23074 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
23013 AAGATTTTTT
*
23023 ATGAATAGTGAACAATAC-CC
1 ATGAACAGTGAACAATACACC
*
23043 ATGAACAGTGAACAATACACT
1 ATGAACAGTGAACAATACACC
23064 ATGAACAGTGA
1 ATGAACAGTGA
23075 GGGAATCGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.19
Consensus pattern (21 bp):
ATGAACAGTGAACAATACACC
Found at i:23607 original size:47 final size:45
Alignment explanation
Indices: 23539--23709 Score: 238
Period size: 47 Copynumber: 3.8 Consensus size: 45
23529 ATAAAATCTT
* *
23539 TTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTATCAAAATAC
*
23584 TTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTATCAACATAC
1 TTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTATCAAAATAC
* *
23631 TTTCCATTTAAATTCCATAAGCTCGTAAGCTTATTTTATCAATATAC
1 TTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTATCAAAATAC
*
23678 TTGCCA-TTATT-CATAAGCTCGTAAGCTTATTT
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTT
23710 GCATACTTAC
Statistics
Matches: 118, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
43 21 0.18
44 3 0.03
45 9 0.08
46 2 0.02
47 83 0.70
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.40
Consensus pattern (45 bp):
TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTATCAAAATAC
Found at i:33307 original size:19 final size:19
Alignment explanation
Indices: 33283--33328 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
33273 CGTAAGCTTA
33283 GTGCAGGTTTAGCACTACG
1 GTGCAGGTTTAGCACTACG
*
33302 GTGCAGGTTTAGCACTATG
1 GTGCAGGTTTAGCACTACG
33321 GTGCAGGT
1 GTGCAGGT
33329 ATTTTACTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.20, C:0.17, G:0.35, T:0.28
Consensus pattern (19 bp):
GTGCAGGTTTAGCACTACG
Found at i:33472 original size:46 final size:45
Alignment explanation
Indices: 33407--33515 Score: 157
Period size: 46 Copynumber: 2.4 Consensus size: 45
33397 ATATATATGG
* *
33407 TTATGGAAT-AATGGCAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGGAATAAATGGTAAGTATATTGATAAAATAAGCTTACGAGC
* *
33451 TTATGGAAATAAATGGTAAGTATATTTATAAAATAATCTTACGAGC
1 TTATGG-AATAAATGGTAAGTATATTGATAAAATAAGCTTACGAGC
*
33497 TTATGGGATAAATGGTAAG
1 TTATGGAATAAATGGTAAG
33516 AGATTTTATA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
44 6 0.10
45 15 0.26
46 37 0.64
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (45 bp):
TTATGGAATAAATGGTAAGTATATTGATAAAATAAGCTTACGAGC
Found at i:33701 original size:30 final size:30
Alignment explanation
Indices: 33665--33721 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
33655 GAAATTACTG
33665 TAGCAGTTACTGTAGCGTATCGATGCACTA
1 TAGCAGTTACTGTAGCGTATCGATGCACTA
33695 TAGCAGTTACTGTAGCGTATCGATGCA
1 TAGCAGTTACTGTAGCGTATCGATGCA
33722 TAATATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGCAGTTACTGTAGCGTATCGATGCACTA
Found at i:33820 original size:10 final size:10
Alignment explanation
Indices: 33805--33843 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
33795 GTTCACAAAT
*
33805 ACTGTTTATC
1 ACTGTTCATC
33815 ACTGTTCATC
1 ACTGTTCATC
33825 ACTGTTCATC
1 ACTGTTCATC
*
33835 ACTATTCAT
1 ACTGTTCAT
33844 AAAAAAATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.23, C:0.26, G:0.08, T:0.44
Consensus pattern (10 bp):
ACTGTTCATC
Found at i:38416 original size:21 final size:21
Alignment explanation
Indices: 38387--38439 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
38377 ATTCTGACTA
38387 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
38408 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
38429 TCGCAATGCGA
1 TCGCATTGCGA
38440 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:38460 original size:41 final size:41
Alignment explanation
Indices: 38414--38663 Score: 193
Period size: 41 Copynumber: 6.1 Consensus size: 41
38404 AAATTCGCGT
* * *
38414 TGCGATTTTCCTAATTCGCAATGCGAATACGTAAATCGCAA
1 TGCGATTTACGTAAATCGCAATGCGAATACGTAAATCGCAA
* * * * *
38455 CGCGA-TTAGGAAAATCGCAATGCGAATTAGGAAAATCGCAA
1 TGCGATTTACGTAAATCGCAATGCGAA-TACGTAAATCGCAA
* * * *
38496 TGCGA-TTACGTAAATCGCAATGCAAATTATGT-ATTCGCAT
1 TGCGATTTACGTAAATCGCAATGCGAA-TACGTAAATCGCAA
* * * * * * **
38536 TGCGATTTTCCTAATTCGCATTGCGATTTACGT-ATTCGCGT
1 TGCGATTTACGTAAATCGCAATGCGA-ATACGTAAATCGCAA
* * * * *
38577 TGCGATTTTCATAATTCGCAACGCGATTACGTAAATCGCAA
1 TGCGATTTACGTAAATCGCAATGCGAATACGTAAATCGCAA
* * *
38618 TGCGAATTAGGAAAATCGCAATGCGAATACGTAAATCGCAA
1 TGCGATTTACGTAAATCGCAATGCGAATACGTAAATCGCAA
38659 TGCGA
1 TGCGA
38664 ATCTGACTAT
Statistics
Matches: 167, Mismatches: 38, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
40 33 0.20
41 134 0.80
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (41 bp):
TGCGATTTACGTAAATCGCAATGCGAATACGTAAATCGCAA
Found at i:38485 original size:21 final size:21
Alignment explanation
Indices: 38429--38665 Score: 200
Period size: 20 Copynumber: 11.6 Consensus size: 21
38419 TTTTCCTAAT
38429 TCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGTAAA
* * *
38449 TCGCAACGCG-ATTAGGAAAA
1 TCGCAATGCGAATTACGTAAA
* *
38469 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGTAAA
38490 TCGCAATGCG-ATTACGTAAA
1 TCGCAATGCGAATTACGTAAA
* * *
38510 TCGCAATGCAAATTATGT-AT
1 TCGCAATGCGAATTACGTAAA
* * * * *
38530 TCGCATTGCGATTTTCCTAAT
1 TCGCAATGCGAATTACGTAAA
* * *
38551 TCGCATTGCGATTTACGT-AT
1 TCGCAATGCGAATTACGTAAA
** * * * *
38571 TCGCGTTGCGATTTTCATAAT
1 TCGCAATGCGAATTACGTAAA
*
38592 TCGCAACGCG-ATTACGTAAA
1 TCGCAATGCGAATTACGTAAA
* *
38612 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGTAAA
38633 TCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGTAAA
38653 TCGCAATGCGAAT
1 TCGCAATGCGAAT
38666 CTGACTATCG
Statistics
Matches: 178, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
19 1 0.01
20 104 0.58
21 73 0.41
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (21 bp):
TCGCAATGCGAATTACGTAAA
Found at i:38555 original size:61 final size:61
Alignment explanation
Indices: 38404--38569 Score: 172
Period size: 61 Copynumber: 2.7 Consensus size: 61
38394 GCGATTTCCC
* * *
38404 AAATTCGCGTTGCGATTTTCCTAATTCGCAATGCGAATACGTAAATCGCAACGCGATTAGG
1 AAATTCGCATTGCGATTTTCCTAATTCGCAATGCGATTACGTAAATCGCAACGCAATTAGG
* * * **** * * *
38465 AAAATCGCAATGCGAATTAGGAAAATCGCAATGCGATTACGTAAATCGCAATGCAAATTATG
1 AAATTCGCATTGCGATTTTCCTAATTCGCAATGCGATTACGTAAATCGCAACGC-AATTAGG
* *
38527 -TATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGTA
1 AAATTCGCATTGCGATTTTCCTAATTCGCAATGCGA-TTACGTA
38570 TTCGCGTTGC
Statistics
Matches: 80, Mismatches: 23, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
61 68 0.85
62 12 0.15
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (61 bp):
AAATTCGCATTGCGATTTTCCTAATTCGCAATGCGATTACGTAAATCGCAACGCAATTAGG
Found at i:38683 original size:143 final size:143
Alignment explanation
Indices: 38367--38686 Score: 412
Period size: 143 Copynumber: 2.2 Consensus size: 143
38357 GTTTCCAGAT
* * * *
38367 TCGCAACGCGATTCTGACTATCGCATTGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAATTCG
1 TCGCAATGCGAATCTGACTATCGCATTGCGATTTCCCAAATTCGCATTGCGATTTACCTAATTCG
* *
38432 CAATGCGAATACGTAAATCGCAACGCGATTAGGAAAATCGCAATGCGAATTAGGAAAATCGCAAT
66 CAATGCGAATACATAAATCGCAACGCGATTACGAAAATCGCAATGCGAATTAGGAAAATCGCAAT
*
38497 GCGATTACGTAAA
131 GCGAATACGTAAA
* * * * *
38510 TCGCAATGCAAAT-T-ATGTATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT-ATT
1 TCGCAATGCGAATCTGA-CTA-TCGCATTGCGATTTCCCAAATTCGCATTGCGATTTACCTAATT
** * * * *
38572 CGCGTTGCGATTTTCATAATTCGCAACGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGC
64 CGCAATGCGA-ATACATAAATCGCAACGCGATTACGAAAATCGCAATGCGAATTAGGAAAATCGC
38637 AATGCGAATACGTAAA
128 AATGCGAATACGTAAA
* *
38653 TCGCAATGCGAATCTGACTATCGTAATGCGATTT
1 TCGCAATGCGAATCTGACTATCGCATTGCGATTT
38687 ACATAGCGCC
Statistics
Matches: 150, Mismatches: 22, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
141 1 0.01
142 14 0.09
143 131 0.87
144 3 0.02
145 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (143 bp):
TCGCAATGCGAATCTGACTATCGCATTGCGATTTCCCAAATTCGCATTGCGATTTACCTAATTCG
CAATGCGAATACATAAATCGCAACGCGATTACGAAAATCGCAATGCGAATTAGGAAAATCGCAAT
GCGAATACGTAAA
Found at i:39251 original size:19 final size:19
Alignment explanation
Indices: 39209--39279 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
39199 TAGTTTCGAG
39209 AATGAAAATCGCAACGCGGA
1 AATGAAAATCGCAACGC-GA
39229 AATGAAAATCGCAACGCGA
1 AATGAAAATCGCAACGCGA
39248 AATGAAAATCGCAACGCGA
1 AATGAAAATCGCAACGCGA
**
39267 AACCAAAATCGCA
1 AATGAAAATCGCA
39280 TTGCGATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 32 0.65
20 17 0.35
ACGTcount: A:0.48, C:0.23, G:0.20, T:0.10
Consensus pattern (19 bp):
AATGAAAATCGCAACGCGA
Found at i:39379 original size:20 final size:19
Alignment explanation
Indices: 39275--39387 Score: 119
Period size: 20 Copynumber: 6.1 Consensus size: 19
39265 GAAACCAAAA
* *
39275 TCGCATTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
39294 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
39308 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
39327 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
39346 TCCGCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT
*
39366 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
39386 TC
1 TC
39388 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
14 10 0.13
16 3 0.04
17 2 0.03
19 29 0.37
20 33 0.42
21 1 0.01
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:39385 original size:40 final size:39
Alignment explanation
Indices: 39280--39387 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 39
39270 CAAAATCGCA
* *
39280 TTGCGATTTTTATTTCGCGTTGCGAT--TC---T-CTCG
1 TTGCGATTTTCATTTCGCGTTGCGATAGTCATTTCCGCG
39313 TTGCGATTTTCATTTCGCGTTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATAGTCATTTCCGCG
* **
39352 TTGCGATTTTCATTCTCTCGTTGCGATTTTCATTTC
1 TTGCGATTTTCATT-TCGCGTTGCGATAGTCATTTC
39388 AACCAAAAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
33 25 0.40
35 2 0.03
38 1 0.02
39 17 0.27
40 18 0.29
ACGTcount: A:0.11, C:0.22, G:0.19, T:0.47
Consensus pattern (39 bp):
TTGCGATTTTCATTTCGCGTTGCGATAGTCATTTCCGCG
Found at i:41251 original size:94 final size:94
Alignment explanation
Indices: 41127--41609 Score: 862
Period size: 94 Copynumber: 5.1 Consensus size: 94
41117 GAAGTTAGTA
*
41127 TTTGTCTTTTGGTTG-AAGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
41191 AACACTGTGAAGTTAGTATTTGTCTTTGT
66 AACACTGTGAAGTTAGTATTTGTCTTTGT
* *
41220 TTTATCTTTTGGTTGAAAGTAAATTTGTTCGGTTACTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
41285 AACACTGTGAAGTTAGTATTTGTCTTTTGT
66 AACACTGTGAAGTTAGTATTTGTC-TTTGT
* *
41315 TTTGTCTTTTGGTTG-AAGTAAATTTATTCGGTTGCTGTCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
41379 AACACTGTGAAGTTAGTATTTGTCTTTGT
66 AACACTGTGAAGTTAGTATTTGTCTTTGT
41408 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
*
41473 AACACTGTGAAGTTAGTATTTGTCATTGT
66 AACACTGTGAAGTTAGTATTTGTCTTTGT
*
41502 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
* *
41567 AATACTCTGAAGTTAGTATTTGTCTTTGT
66 AACACTGTGAAGTTAGTATTTGTCTTTGT
41596 TTTGTCTTTTGGTT
1 TTTGTCTTTTGGTT
41610 TAAGTAATGC
Statistics
Matches: 373, Mismatches: 14, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
93 34 0.09
94 320 0.86
95 19 0.05
ACGTcount: A:0.20, C:0.12, G:0.19, T:0.48
Consensus pattern (94 bp):
TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
AACACTGTGAAGTTAGTATTTGTCTTTGT
Found at i:41753 original size:19 final size:19
Alignment explanation
Indices: 41707--41764 Score: 98
Period size: 19 Copynumber: 3.0 Consensus size: 19
41697 TCTTTTGGTT
41707 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
41726 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGA
41746 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
41765 CAAAATCGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.50, C:0.17, G:0.22, T:0.10
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:41869 original size:20 final size:19
Alignment explanation
Indices: 41789--41915 Score: 120
Period size: 19 Copynumber: 6.8 Consensus size: 19
41779 GAAACTATAA
*
41789 TCGCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
* *
41808 TCGCATTGCGATTCTC--T
1 TCGCGTTGCGATTTTCATT
*
41825 T---GTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
41841 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
41860 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
**
41880 TCGCGTTGCGATAGTCATTTT
1 TCGCGTTGCGATTTTCA--TT
*
41901 TCACGTTGCGATTTT
1 TCGCGTTGCGATTTT
41916 AAGTTCCAGA
Statistics
Matches: 86, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
14 9 0.10
16 2 0.02
17 2 0.02
19 41 0.48
20 18 0.21
21 14 0.16
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.48
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:41872 original size:39 final size:38
Alignment explanation
Indices: 41792--41917 Score: 136
Period size: 39 Copynumber: 3.4 Consensus size: 38
41782 ACTATAATCG
*
41792 CGTTGCGATTTTAATTTCGCATTGCGA-TTC--TCT-T
1 CGTTGCGATTTTAATTTCGCGTTGCGATTTCATTCTCT
*
41826 -GTTGCGATTTTTATTTCGCGTTGCGATTTTCATTCTCT
1 CGTTGCGATTTTAATTTCGCGTTGCGA-TTTCATTCTCT
* * * *
41864 CGTTGCGATTTTCATTTCGCGTTGCGATAGTCATTTTTCA
1 CGTTGCGATTTTAATTTCGCGTTGCGAT-TTCA-TTCTCT
41904 CGTTGCGATTTTAA
1 CGTTGCGATTTTAA
41918 GTTCCAGAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
33 24 0.31
35 3 0.04
37 3 0.04
38 2 0.03
39 28 0.36
40 17 0.22
ACGTcount: A:0.14, C:0.19, G:0.19, T:0.48
Consensus pattern (38 bp):
CGTTGCGATTTTAATTTCGCGTTGCGATTTCATTCTCT
Found at i:43804 original size:14 final size:14
Alignment explanation
Indices: 43785--43820 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
43775 ATTGTTTAAT
43785 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
43799 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
43813 TGATTTGT
1 TGATTTGT
43821 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:43889 original size:19 final size:19
Alignment explanation
Indices: 43865--43942 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
43855 GTTTAATTGA
43865 TGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTCGCAT
*
43884 TGCGA--TTC-TCTCG--T
1 TGCGATTTTCATTTCGCAT
43898 TGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTCGCAT
** *
43917 TGCGATAGTCATTTCCGCGT
1 TGCGATTTTCATTT-CGCAT
43937 TGCGAT
1 TGCGAT
43943 AGACATTAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
14 6 0.12
16 7 0.15
17 7 0.15
19 18 0.38
20 10 0.21
ACGTcount: A:0.14, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TGCGATTTTCATTTCGCAT
Found at i:43941 original size:20 final size:19
Alignment explanation
Indices: 43895--43949 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
43885 GCGATTCTCT
**
43895 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
*
43914 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
*
43934 CGTTGCGATAGACATT
1 CGTTGCGATAGTCATT
43950 AAGATGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:46493 original size:24 final size:24
Alignment explanation
Indices: 46459--46526 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
46449 CTGAAAAATC
46459 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
46483 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* * *
46507 ATCAAATTTCGAGTACTGAC
1 ATCAAAATCCGAGTATTGAC
46527 TAGTACTCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:47389 original size:20 final size:20
Alignment explanation
Indices: 47366--47635 Score: 226
Period size: 20 Copynumber: 13.3 Consensus size: 20
47356 CGATAGTCAG
*
47366 AATCTCATTGCGATTACGTA
1 AATCGCATTGCGATTACGTA
*
47386 AATCGCAATGCGATTACGTA
1 AATCGCATTGCGATTACGTA
* * * *
47406 AATCGAAGTGCGAATTAGGAA
1 AATCGCATTGCG-ATTACGTA
* *
47427 AATCGCAATGCGATTACATA
1 AATCGCATTGCGATTACGTA
* * *
47447 AATCGCAATGCGAATTAGGAA
1 AATCGCATTGCG-ATTACGTA
*
47468 AATCGCAATGCGATTACGTA
1 AATCGCATTGCGATTACGTA
* *
47488 AATCGCAATACGATTACGT-
1 AATCGCATTGCGATTACGTA
* *
47507 ATTTGCATTGCGATTTACGT-
1 AATCGCATTGCGA-TTACGTA
* *
47527 AATCGCATTGCGATTTTCCTA
1 AATCGCATTGCGA-TTACGTA
*
47548 ATTCGCATTGCGATTTACGT-
1 AATCGCATTGCGA-TTACGTA
47568 AATCGCATTGCGATTTACGT-
1 AATCGCATTGCGA-TTACGTA
*
47588 AATCGCATTGTGATTTACGT-
1 AATCGCATTGCGA-TTACGTA
* * *
47608 ATTCGCATTGCGAATTAGGAA
1 AATCGCATTGCG-ATTACGTA
47629 AATCGCA
1 AATCGCA
47636 ACGCGAATTT
Statistics
Matches: 209, Mismatches: 35, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
19 9 0.04
20 143 0.68
21 57 0.27
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (20 bp):
AATCGCATTGCGATTACGTA
Found at i:47430 original size:41 final size:41
Alignment explanation
Indices: 47385--47662 Score: 219
Period size: 41 Copynumber: 6.8 Consensus size: 41
47375 GCGATTACGT
47385 AAATCGCAATGCGATTACGTAAATCG-AAGTGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATCGCAA-TGCGAATTAGGA
*
47426 AAATCGCAATGCGATTACATAAATCGCAATGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
* *
47467 AAATCGCAATGCGATTACGTAAATCGCAATACG-ATTACG-
1 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
* * * * * * ****
47506 TATTTGCATTGCGATTTACGT-AATCGCATTGCGATTTTCCT
1 AAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTAGGA
* * * * *
47547 AATTCGCATTGCGATTTACGT-AATCGCATTGCGATTTACG-
1 AAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTAGGA
* * * * *
47587 TAATCGCATTGTGATTTACGT-ATTCGCATTGCGAATTAGGA
1 AAATCGCAATGCGA-TTACGTAAATCGCAATGCGAATTAGGA
* ** *
47628 AAATCGCAACGCGAATTTGGGAAATCGCAATGCGA
1 AAATCGCAATGCG-ATTACGTAAATCGCAATGCGA
47663 TAGTCAGAAT
Statistics
Matches: 198, Mismatches: 32, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
39 20 0.10
40 48 0.24
41 116 0.59
42 14 0.07
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (41 bp):
AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
Found at i:47579 original size:61 final size:61
Alignment explanation
Indices: 47366--47641 Score: 247
Period size: 61 Copynumber: 4.5 Consensus size: 61
47356 CGATAGTCAG
* * * * * *
47366 AATCTCATTGCGATTACGTAAATCGCAATGCGA-TTACGTAAATCGAAGTGCGAATTAGGAA
1 AATCGCATTGCGATTACGTAAATCGCAATGCGATTTACGT-AATCGCATTGCGATTTACGTA
* * * * * *
47427 AATCGCAATGCGATTACATAAATCGCAATGCGAATTAGGAAAATCGCAATGCGA-TTACGTA
1 AATCGCATTGCGATTACGTAAATCGCAATGCGATTTACG-TAATCGCATTGCGATTTACGTA
* * * * * * *
47488 AATCGCAATACGATTACGT-ATTTGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTA
1 AATCGCATTGCGATTACGTAAATCGCAATGCGATTTACGTAATCGCATTGCGATTTACGTA
* * *
47548 ATTCGCATTGCGATTTACGT-AATCGCATTGCGATTTACGTAATCGCATTGTGATTTACGT-
1 AATCGCATTGCGA-TTACGTAAATCGCAATGCGATTTACGTAATCGCATTGCGATTTACGTA
* * * *
47608 ATTCGCATTGCGAATTAGGAAAATCGCAACGCGA
1 AATCGCATTGCG-ATTACGTAAATCGCAATGCGA
47642 ATTTGGGAAA
Statistics
Matches: 177, Mismatches: 32, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
59 12 0.07
60 45 0.25
61 105 0.59
62 15 0.08
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (61 bp):
AATCGCATTGCGATTACGTAAATCGCAATGCGATTTACGTAATCGCATTGCGATTTACGTA
Found at i:47614 original size:81 final size:80
Alignment explanation
Indices: 47366--47620 Score: 221
Period size: 81 Copynumber: 3.2 Consensus size: 80
47356 CGATAGTCAG
* * * * * * *
47366 AATCTCATTGCGA-TTACGTAAATCGCAATGCGATTACGTAAATCG-AAGTGCGAATTAGGAAAA
1 AATCGCATTGCGATTTTCCTAATTCGCAATGCGATTACGTAAATCGCAA-TACG-ATTACG-TAA
* *
47429 TCGCAATGCGA-TTACAT
63 TCGCATTGCGATTTACGT
* * **** * * *
47446 AAATCGCAATGCGAATTAGGAAAATCGCAATGCGATTACGTAAATCGCAATACGATTACGTATTT
1 -AATCGCATTGCGATTTTCCTAATTCGCAATGCGATTACGTAAATCGCAATACGATTACGTAATC
47511 GCATTGCGATTTACGT
65 GCATTGCGATTTACGT
* * *
47527 AATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT-AATCGCATTGCGATTTACGTAAT
1 AATCGCATTGCGATTTTCCTAATTCGCAATGCGA-TTACGTAAATCGCAATACGA-TTACGTAAT
*
47591 CGCATTGTGATTTACGT
64 CGCATTGCGATTTACGT
*
47608 ATTCGCATTGCGA
1 AATCGCATTGCGA
47621 ATTAGGAAAA
Statistics
Matches: 144, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
80 47 0.33
81 62 0.43
82 33 0.23
83 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (80 bp):
AATCGCATTGCGATTTTCCTAATTCGCAATGCGATTACGTAAATCGCAATACGATTACGTAATCG
CATTGCGATTTACGT
Found at i:47641 original size:21 final size:21
Alignment explanation
Indices: 47617--47662 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
47607 TATTCGCATT
47617 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
47638 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
47659 GCGA
1 GCGA
47663 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:49043 original size:14 final size:14
Alignment explanation
Indices: 49024--49067 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
49014 GTAAAATACA
*
49024 GTATGAGCAGTACC
1 GTATGAACAGTACC
*
49038 GTATGAACAATACC
1 GTATGAACAGTACC
*
49052 GTATGAATAGTACC
1 GTATGAACAGTACC
49066 GT
1 GT
49068 GAACAATACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (14 bp):
GTATGAACAGTACC
Found at i:49077 original size:26 final size:27
Alignment explanation
Indices: 49018--49077 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
49008 TGAACAGTAA
* *
49018 AATACAGTATGAGCAGTACCGTATGAAC
1 AATACCGTATGAACAGTACCG-ATGAAC
*
49046 AATACCGTATGAATAGTACCG-TGAAC
1 AATACCGTATGAACAGTACCGATGAAC
49072 AATACC
1 AATACC
49078 AAAATGTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 11 0.38
28 18 0.62
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (27 bp):
AATACCGTATGAACAGTACCGATGAAC
Found at i:49200 original size:13 final size:14
Alignment explanation
Indices: 49175--49203 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
49165 TAAAACGTTC
49175 ATCATTATACATTT
1 ATCATTATACATTT
49189 ATCATT-TACATTT
1 ATCATTATACATTT
49202 AT
1 AT
49204 ACGTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (14 bp):
ATCATTATACATTT
Found at i:50039 original size:21 final size:21
Alignment explanation
Indices: 50013--50069 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
50003 TATATGAAAT
*
50013 TTGTCCCG-AAGAACCACTGTA
1 TTGTCCCGAAAG-ACCACTGCA
50034 TTGTCCCGAAAGACCACTGCA
1 TTGTCCCGAAAGACCACTGCA
*
50055 TTGTCCCGAATGACC
1 TTGTCCCGAAAGACC
50070 TATGAAACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 30 0.91
22 3 0.09
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (21 bp):
TTGTCCCGAAAGACCACTGCA
Found at i:51190 original size:12 final size:12
Alignment explanation
Indices: 51175--51209 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
51165 AACCCAACCT
51175 TTAATTCAACAA
1 TTAATTCAACAA
51187 TTAATTCAACAA
1 TTAATTCAACAA
*
51199 ATAA-TCAACAA
1 TTAATTCAACAA
51210 AATAGAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (12 bp):
TTAATTCAACAA
Found at i:54799 original size:22 final size:22
Alignment explanation
Indices: 54737--54801 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
54727 GAAATATGGT
54737 ATGAACAGTATCGTATGAACAATA
1 ATGAACAGTA-C-TATGAACAATA
* * *
54761 ATGAATAGTACTGTGAACAATG
1 ATGAACAGTACTATGAACAATA
*
54783 ATGAACAGTACCATGAACA
1 ATGAACAGTACTATGAACA
54802 GTTCCAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 25 0.71
23 1 0.03
24 9 0.26
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (22 bp):
ATGAACAGTACTATGAACAATA
Found at i:54876 original size:21 final size:22
Alignment explanation
Indices: 54838--54881 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
54828 AATGTAAGAG
*
54838 GGGAATCGATTCCCCTGCTACA
1 GGGAACCGATTCCCCTGCTACA
54860 GGGAACCGATT-CCCTGCTACA
1 GGGAACCGATTCCCCTGCTACA
54881 G
1 G
54882 TACTTCGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (22 bp):
GGGAACCGATTCCCCTGCTACA
Found at i:55794 original size:21 final size:21
Alignment explanation
Indices: 55770--55823 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
55760 CATATGAAAT
* *
55770 TTATCTCGAATGACCATTGTA
1 TTATCCCGAATGACCACTGTA
*
55791 TTATCCCGAAGGACCACTGTA
1 TTATCCCGAATGACCACTGTA
*
55812 TTGTCCCGAATG
1 TTATCCCGAATG
55824 GCCTATGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (21 bp):
TTATCCCGAATGACCACTGTA
Found at i:61878 original size:24 final size:24
Alignment explanation
Indices: 61793--61880 Score: 72
Period size: 24 Copynumber: 3.7 Consensus size: 24
61783 GATATCAGAA
* * *
61793 ATCAAAACATAATTCAGAAT-AGAT
1 ATCAGAACAGAATTCAG-ATCATAT
* *
61817 ATCAGAACAGAATCCAGATCATAA
1 ATCAGAACAGAATTCAGATCATAT
* * *
61841 ATCA-AAGCGGAATTCAGGTCATGT
1 ATCAGAA-CAGAATTCAGATCATAT
61865 ATCAGAACAGAATTCA
1 ATCAGAACAGAATTCA
61881 AGTCGAAAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
23 4 0.08
24 44 0.88
25 2 0.04
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.22
Consensus pattern (24 bp):
ATCAGAACAGAATTCAGATCATAT
Found at i:65330 original size:2 final size:2
Alignment explanation
Indices: 65283--65312 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
65273 GAATGACATG
65283 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65313 CTGTACAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.