genome.fa.s5336.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005336.1 Hibiscus syriacus cultivar Beakdansim tig00012084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90696

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8709--9009	59	5.1	59	88	1	451	27	22	12	37	1.90
10351--10427	2	39.0	2	89	7	122	51	0	1	46	1.09
15925--15952	2	14.0	2	100	0	56	50	0	0	50	1.00
19788--20120	113	2.9	112	81	6	352	39	18	14	27	1.89
22948--23883	2	463.0	2	61	23	96	46	6	3	43	1.47
22966--23010	13	4.1	11	78	21	58	35	0	11	53	1.37
23008--23103	30	3.1	30	79	13	106	48	5	0	45	1.24
23060--23114	17	3.2	17	86	2	56	47	3	0	49	1.19
22948--23369	11	36.2	11	64	20	87	45	4	4	46	1.43
23190--23303	29	3.8	30	72	19	85	50	6	2	41	1.41
23284--23449	9	18.4	9	67	18	53	46	7	3	42	1.49
23239--23368	7	18.3	7	67	23	51	44	5	3	46	1.41
23405--23524	27	4.4	27	81	12	113	46	5	4	43	1.47
23585--23626	9	4.4	9	85	11	57	47	9	0	42	1.36
24736--24774	19	2.1	19	90	0	60	15	25	38	20	1.92
24830--24895	29	2.3	29	94	0	114	15	25	31	27	1.95
30594--30671	24	3.4	23	71	18	56	24	24	20	30	1.98
31047--31103	26	2.1	27	83	9	71	49	5	5	40	1.48
33241--33450	65	3.3	63	78	11	194	31	24	18	26	1.97
38869--38909	14	2.9	14	89	10	57	0	17	2	80	0.82
42860--42893	14	2.4	14	95	0	59	58	8	5	26	1.51
44446--44484	5	7.4	5	97	2	60	25	53	20	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44989--45021	6	5.7	6	89	3	50	0	18	48	33	1.48
45096--45188	41	2.2	41	85	9	118	36	23	22	17	1.94
45096--45188	20	4.5	20	68	10	71	36	23	22	17	1.94
45121--45215	41	2.4	40	85	7	122	33	24	20	22	1.97
45192--45236	21	2.1	21	91	0	72	28	24	15	31	1.96
51105--51154	21	2.5	19	81	12	55	38	2	4	56	1.30
51108--51148	22	2.0	20	85	9	55	39	2	4	53	1.35
52976--53060	28	3.1	28	89	3	120	42	12	23	21	1.87
59949--59992	3	14.0	3	81	9	52	63	2	0	34	1.07
59949--59992	16	2.8	16	92	0	70	63	2	0	34	1.07
60115--60694	258	2.2	261	81	5	644	34	16	15	33	1.91
60619--60754	41	3.3	42	74	7	134	34	22	19	22	1.97
64598--64633	2	18.0	2	100	0	72	50	0	0	50	1.00
72140--72180	18	2.3	18	87	8	57	36	2	0	60	1.10
72140--72203	19	3.4	18	81	10	58	32	3	1	62	1.20
72226--72267	13	3.2	13	80	19	52	33	0	2	64	1.07
77849--77935	44	2.0	44	86	0	120	33	8	20	37	1.82
77876--77935	14	4.1	14	72	8	57	30	8	21	40	1.83
78014--78099	23	3.7	23	72	6	68	19	20	25	33	1.97
78014--78104	46	2.0	46	85	8	123	19	20	24	35	1.96
78043--78112	23	3.0	23	80	0	86	15	21	25	37	1.93
78103--78148	24	1.9	24	90	0	74	15	21	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78281--78311	2	15.0	2	93	6	53	48	0	3	48	1.17
78743--78774	16	2.0	16	93	0	55	46	3	6	43	1.44
81025--81066	17	2.5	17	96	3	77	30	21	14	33	1.93
84893--84989	44	2.2	44	83	0	122	34	7	19	39	1.79
85065--85213	23	6.4	23	82	4	183	16	21	24	36	1.94
85215--85273	24	2.5	24	94	0	100	18	28	22	30	1.97
85399--85432	2	17.0	2	87	0	50	50	5	0	44	1.26
86884--86951	20	3.4	20	70	0	64	19	20	25	35	1.96

Tables:   1

The End!