genome.fa.s5337.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005337.1 Hibiscus syriacus cultivar Beakdansim tig00012085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69362

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6533--6603	34	2.1	34	85	12	94	32	26	9	30	1.89
9618--9648	15	2.1	15	93	0	53	25	9	22	41	1.84
12851--13160	53	5.8	53	84	2	365	22	24	21	31	1.98
12851--13160	105	2.9	105	85	3	392	22	24	21	31	1.98
13643--14123	42	11.0	42	73	11	360	30	21	18	29	1.97
13799--13823	13	1.9	13	100	0	50	24	20	24	32	1.98
13768--14081	93	3.5	91	80	9	419	30	21	17	29	1.96
13878--13980	22	4.9	21	66	20	63	33	21	18	27	1.96
13685--14121	177	2.5	177	93	0	748	30	21	18	29	1.97
13904--14228	135	2.4	134	87	2	463	31	21	18	28	1.97
14041--14116	22	3.6	21	71	15	66	32	21	19	26	1.97
29957--29985	2	14.5	2	100	0	58	51	0	0	48	1.00
30168--30212	13	3.5	13	90	0	63	33	13	20	33	1.91
30181--30239	26	2.2	28	81	6	68	28	15	20	35	1.93
33765--33889	31	4.0	31	93	2	198	20	18	23	38	1.93
38052--38176	62	2.0	62	89	3	189	21	19	21	37	1.94
38052--38161	31	3.5	31	94	0	193	20	20	20	39	1.93
42340--42464	31	4.0	31	94	2	207	20	19	23	37	1.94
45828--45862	2	18.0	2	94	5	63	48	0	0	51	1.00
46736--46786	2	25.5	2	100	0	102	49	0	0	50	1.00
46857--46889	2	16.5	2	100	0	66	48	0	0	51	1.00
46754--46958	104	2.0	103	98	0	392	39	9	8	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46769--46986	104	2.1	101	88	5	312	39	9	10	40	1.72
48427--48460	2	17.0	2	100	0	68	50	0	0	50	1.00
50455--50499	19	2.5	17	82	13	54	53	0	6	40	1.27
51416--51457	17	2.4	17	88	8	57	30	9	28	30	1.89
51900--51946	18	2.6	18	90	6	69	40	34	8	17	1.79
57633--57735	53	1.9	53	88	3	154	47	12	8	31	1.72
58043--58155	60	1.9	59	81	5	138	32	18	4	44	1.70
67298--67335	20	1.9	20	94	0	67	44	10	23	21	1.83
67298--67342	20	2.4	19	88	7	65	46	8	24	20	1.78
67488--67555	37	1.9	37	82	8	88	48	4	0	47	1.22

Tables:   1

The End!