Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005338.1 Hibiscus syriacus cultivar Beakdansim tig00012090_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58067

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3231--3286
22
2.7
21
83
10
62
30
23
17
28
1.97
4815--4858
21
2.1
21
86
0
61
9
36
15
38
1.80
5887--5925
19
2.1
19
90
0
60
23
38
12
25
1.90
5873--6033
65
2.5
65
85
3
209
31
26
15
27
1.96
5873--6053
64
2.8
64
83
2
211
29
26
16
27
1.97
12651--12698
2
24.0
2
100
0
96
50
0
0
50
1.00
13672--13740
34
2.1
34
94
2
122
34
21
15
27
1.94
16467--16493
2
13.5
2
100
0
54
51
0
0
48
1.00
24249--24289
18
2.3
18
91
4
66
29
4
2
63
1.28
26591--26677
35
2.5
34
80
12
97
26
8
10
55
1.61
27951--27976
6
4.3
6
100
0
52
65
15
19
0
1.27
30542--30587
3
15.7
3
82
13
60
30
2
0
67
1.03
30544--30587
17
2.8
16
86
10
63
29
2
0
68
1.02
31342--31381
16
2.5
16
95
0
71
62
0
22
15
1.32
31650--31749
39
2.6
37
73
14
96
29
3
2
66
1.18
31646--31773
45
3.1
40
72
17
104
28
2
2
66
1.16
31891--31943
17
3.1
17
83
8
54
15
18
1
64
1.38
35069--35124
24
2.3
24
90
0
85
14
8
21
55
1.66
35346--35435
33
2.7
33
91
0
144
27
26
21
24
1.99
36658--36732
10
7.7
10
68
21
52
9
10
21
58
1.59
36664--36728
16
4.1
16
91
0
112
7
10
23
58
1.57
36797--36827
15
2.0
16
93
6
55
6
12
25
54
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39915--40070
31
5.0
31
93
0
258
19
17
23
39
1.92
40495--40554
27
2.2
27
100
0
120
45
0
18
36
1.50
45137--45220
3
27.3
3
72
13
64
39
0
1
59
1.05
55855--55908
26
2.0
27
92
3
92
42
11
3
42
1.58

Tables:   1

The End!