genome.fa.s534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000534.1 Hibiscus syriacus cultivar Beakdansim tig00001031_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114082

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--285	136	2.0	135	86	6	391	30	12	14	42	1.82
24--323	136	2.2	133	80	7	363	30	12	13	43	1.81
1706--1792	24	3.7	23	80	11	63	29	26	25	18	1.98
1710--1840	47	2.7	48	84	8	142	33	25	22	19	1.97
1750--1848	25	4.0	25	90	1	146	34	24	21	20	1.97
7857--7930	24	3.0	24	86	3	112	28	22	25	22	1.99
7857--7930	25	3.0	25	88	2	114	28	22	25	22	1.99
8900--8944	23	1.9	24	86	4	65	28	26	0	44	1.55
11263--11329	34	2.0	34	82	2	82	20	13	14	50	1.77
12626--12702	29	2.6	29	87	2	118	29	12	5	51	1.62
16364--16417	27	2.0	27	85	7	74	40	1	3	53	1.29
16478--16557	39	2.1	39	100	0	160	37	10	18	33	1.84
16781--17070	38	7.7	37	75	14	227	45	5	9	40	1.59
16782--17006	37	6.0	36	75	16	120	43	5	11	40	1.64
16990--17123	43	3.3	41	77	17	145	50	3	3	42	1.38
16984--17123	38	3.4	43	77	17	120	50	3	3	42	1.37
17111--17175	16	4.2	16	78	18	59	32	0	0	67	0.91
17123--17182	19	3.2	20	84	15	83	31	0	0	68	0.90
17111--17178	10	7.3	9	78	16	68	32	0	0	67	0.91
17118--17178	4	14.2	4	74	19	52	31	0	0	68	0.89
17122--17188	5	13.8	5	72	9	50	29	0	0	70	0.88
17111--17188	29	2.5	31	78	13	90	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20697--20749	22	2.4	22	78	12	56	52	15	15	16	1.74
28191--28255	26	2.5	26	94	0	112	32	18	30	18	1.95
37065--37099	12	2.8	12	86	4	52	40	11	2	45	1.55
37065--37102	13	3.0	13	80	7	51	39	10	2	47	1.52
38762--38795	12	2.7	13	90	9	61	47	8	5	38	1.59
41539--41584	3	15.3	3	100	0	92	67	0	0	32	0.91
41979--42074	21	4.5	21	74	15	83	34	14	12	38	1.84
42526--42591	32	2.1	31	91	5	107	19	19	13	46	1.83
47771--48218	228	2.0	226	94	2	781	45	8	7	39	1.62
48269--48327	20	3.0	19	79	16	66	52	15	15	16	1.75
48450--48496	20	2.4	19	89	10	76	55	10	17	17	1.69
48454--48501	20	2.6	18	84	15	62	56	10	14	18	1.66
50676--50740	21	3.1	21	80	6	69	40	15	29	15	1.88
50773--50838	33	2.0	33	90	0	105	28	0	48	22	1.51
52627--52674	19	2.6	19	93	3	80	31	2	10	56	1.45
52794--54753	199	9.9	199	97	1	3742	36	16	16	30	1.91
52794--54753	397	4.9	398	98	1	3769	36	16	16	30	1.91
56225--56299	3	25.0	3	79	0	78	34	5	34	25	1.79
57494--58004	182	2.8	183	94	2	884	36	14	16	33	1.88
58361--58842	183	2.6	183	96	0	883	36	14	16	32	1.89
58838--58880	22	1.9	23	90	4	70	30	11	13	44	1.80
57535--59427	838	2.3	838	98	1	3611	37	12	14	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62000--62063	23	2.8	23	87	0	92	35	6	20	37	1.78
62000--62072	23	3.2	23	82	7	85	34	5	20	39	1.76
62430--62493	23	2.8	23	87	0	92	35	6	20	37	1.78
62430--62502	23	3.2	23	82	7	85	34	5	20	39	1.76
62767--62817	25	2.0	25	92	0	84	33	7	19	39	1.81
63358--63483	39	3.2	39	97	0	234	48	20	13	17	1.81
63886--63949	23	2.8	23	87	0	92	35	6	20	37	1.78
63886--63958	23	3.2	23	82	7	85	35	5	19	39	1.75
72287--72315	11	2.7	11	94	5	51	27	0	0	72	0.85
77425--78056	73	8.6	72	83	6	378	26	19	15	38	1.91
77390--77684	109	2.7	109	83	3	335	26	20	14	38	1.91
77443--78295	36	22.9	38	83	6	855	27	18	14	39	1.90
77589--78274	150	4.6	149	85	5	881	27	17	14	39	1.89
78298--78719	98	4.3	98	83	3	496	30	11	20	38	1.87
78297--78719	193	2.2	196	84	2	566	30	11	20	38	1.87
78843--78923	37	2.2	37	91	2	128	29	19	16	34	1.94
78843--79089	36	7.2	36	70	19	131	27	23	14	34	1.93
78879--79051	66	2.6	65	83	5	206	28	23	13	34	1.92
79002--79089	36	2.4	36	90	0	140	28	25	12	34	1.92
79069--79256	73	2.5	74	85	6	245	30	21	12	35	1.91
79033--79236	36	5.5	37	69	6	119	28	22	14	34	1.93
79536--79982	136	3.3	136	83	0	536	35	18	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80037--80139	40	2.5	42	82	6	113	29	24	19	27	1.98
80437--80473	18	2.1	18	100	0	74	21	45	5	27	1.73
81573--81601	11	2.7	11	94	5	51	27	0	0	72	0.85
84861--84905	23	2.0	23	86	0	63	26	20	22	31	1.98
91146--91249	45	2.3	47	81	6	124	39	22	19	19	1.93
91874--91931	23	2.5	23	88	0	89	17	25	29	27	1.97
95498--95589	46	2.0	46	84	0	121	15	11	39	33	1.84
104341--104375	10	3.5	10	88	0	52	60	17	2	20	1.49

Tables:   1

The End!