Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005340.1 Hibiscus syriacus cultivar Beakdansim tig00012095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88880

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
396--472
22
3.5
22
87
3
102
37
24
14
23
1.92
1262--1619
103
3.5
102
81
5
404
34
24
18
22
1.96
1262--1623
99
3.5
101
80
5
365
35
24
18
22
1.96
13487--13520
17
2.1
16
88
5
50
14
8
0
76
1.01
14325--14416
37
2.5
36
87
3
130
39
15
14
31
1.87
15023--15071
2
24.5
2
95
0
89
46
0
2
51
1.12
15211--15254
18
2.2
21
80
15
58
27
4
0
68
1.09
15284--15332
2
24.5
2
100
0
98
48
0
0
51
1.00
15330--15379
4
12.2
4
80
16
50
18
6
0
76
0.99
15336--15403
12
5.6
12
76
10
66
17
7
0
75
1.03
21567--21624
20
2.6
22
89
10
84
25
22
20
31
1.98
21614--21772
64
2.5
63
81
7
185
23
25
18
32
1.97
27522--27589
31
2.2
31
86
2
93
25
20
8
45
1.80
29726--29753
2
14.0
2
100
0
56
50
0
0
50
1.00
30286--30350
31
2.1
31
97
0
121
52
15
1
30
1.52
39750--39864
52
2.2
52
81
1
133
56
0
6
35
1.32
50037--50089
14
3.8
14
92
0
79
45
0
1
52
1.11
50037--50089
4
13.2
4
91
0
79
45
0
1
52
1.11
50037--50089
6
8.8
6
89
0
79
45
0
1
52
1.11
53715--53754
5
7.8
5
91
2
53
20
7
0
72
1.08
57965--58034
35
2.0
35
91
0
113
31
18
22
27
1.97
59709--59750
17
2.3
19
88
8
61
42
14
0
42
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72637--72684
2
24.0
2
100
0
96
50
0
0
50
1.00
75366--75402
19
1.9
19
88
0
56
45
0
8
45
1.32
83012--83228
102
2.1
103
95
0
391
25
11
23
38
1.89
83245--83307
23
2.7
23
82
0
72
20
23
26
28
1.99

Tables:   1

The End!