genome.fa.s5341.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005341.1 Hibiscus syriacus cultivar Beakdansim tig00012096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83879

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998--1117	64	1.9	63	82	5	152	36	20	16	26	1.93
1502--1560	31	1.9	30	86	10	84	37	1	25	35	1.66
8309--8368	31	2.0	30	87	9	86	36	1	25	36	1.66
9103--9155	23	2.3	23	90	0	79	16	24	28	30	1.97
11212--11265	24	2.2	24	90	0	81	40	20	16	22	1.91
12196--12263	20	3.4	20	80	8	84	35	10	23	30	1.88
12197--12274	40	2.0	40	89	5	122	37	10	21	30	1.87
12196--12303	40	2.7	39	83	8	121	35	10	23	31	1.88
12175--12311	20	6.9	20	68	17	72	39	9	21	29	1.85
12317--12408	20	4.5	20	69	16	55	29	13	27	30	1.94
12391--12432	20	2.1	20	90	0	66	30	9	30	28	1.89
12316--12445	62	2.1	58	81	13	138	26	13	29	30	1.94
15835--15898	21	3.0	21	86	4	92	25	25	23	26	2.00
20890--20941	16	3.0	17	80	8	61	26	3	23	46	1.69
21313--21354	22	1.9	22	95	0	75	21	26	23	28	1.99
21510--21568	28	2.1	28	81	12	68	37	5	16	40	1.71
40997--41062	33	2.0	33	100	0	132	39	15	12	33	1.84
43088--43113	9	2.9	9	100	0	52	23	0	0	76	0.78
44341--44534	20	9.7	20	84	2	201	35	24	20	19	1.95
44281--44534	60	4.2	59	79	6	190	37	25	18	18	1.94
44915--44985	33	2.2	33	89	0	106	11	23	16	47	1.79
45058--45174	41	3.1	38	79	14	136	45	17	25	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45065--45140	21	3.7	21	85	3	109	44	18	25	11	1.83
45125--45181	14	3.7	14	75	20	60	43	22	24	8	1.81
45117--45197	33	2.5	33	93	0	135	45	23	22	8	1.79
45193--45290	19	5.7	19	68	22	72	10	24	23	41	1.85
45215--45304	14	5.7	14	74	23	81	8	25	24	41	1.84
45198--45312	33	3.5	33	95	0	203	9	24	21	44	1.82
47003--47476	93	5.1	93	99	0	930	22	12	18	45	1.83
47520--47648	19	7.3	19	75	17	125	45	28	17	8	1.77
47556--47648	33	2.8	32	91	4	150	46	27	18	7	1.76
47520--47648	52	2.5	52	74	14	140	45	28	17	8	1.77
47644--47778	19	7.6	19	75	16	128	11	19	23	45	1.82
47666--47722	14	3.7	14	77	20	60	10	21	22	45	1.82
47649--47741	33	2.8	33	95	0	168	10	20	21	47	1.80
49827--49926	19	5.5	19	83	12	138	45	17	22	16	1.86
49827--49943	53	2.2	53	93	1	200	43	17	23	15	1.87
49933--50030	19	5.7	18	69	22	77	16	21	18	43	1.87
49957--50044	14	5.6	14	67	23	50	12	22	19	45	1.84
49939--50062	33	3.7	33	96	1	221	14	22	18	44	1.86
50121--50217	19	5.4	19	82	15	134	45	17	22	14	1.85
50121--50236	51	2.2	53	96	3	218	43	18	24	13	1.86
50428--50620	20	9.6	20	83	3	219	19	20	25	35	1.96
50607--50689	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50587--50685	42	2.4	43	77	11	100	21	18	23	37	1.94
54446--54527	3	27.7	3	87	7	123	32	2	0	64	1.07
56011--56035	11	2.3	11	100	0	50	36	8	8	48	1.62
56264--56295	6	5.3	6	100	0	64	50	15	34	0	1.45
68574--68647	5	15.6	5	73	18	61	79	0	17	2	0.84
68574--68647	9	7.8	10	70	21	61	79	0	17	2	0.84
68569--68647	19	4.4	17	81	15	88	79	0	17	2	0.84
68573--68647	6	12.5	6	76	20	61	80	0	17	2	0.84
69779--70021	50	4.9	50	98	1	470	22	13	23	39	1.90
69779--70021	99	2.4	100	98	0	470	22	13	23	39	1.90
70742--71504	118	6.5	118	95	2	1323	35	15	20	28	1.93
70742--71504	234	3.3	234	95	3	1324	35	15	20	28	1.93
71658--71736	3	26.7	3	89	2	124	32	1	0	65	1.00
72199--72224	6	4.3	6	100	0	52	50	15	34	0	1.45
79756--80169	55	7.8	55	81	10	438	29	24	17	28	1.97
79756--80169	156	2.6	158	84	9	486	29	24	17	28	1.97
80186--80298	38	3.1	37	89	5	185	21	23	18	36	1.95
81552--81703	20	7.4	19	69	20	69	9	13	0	76	1.00
81564--81703	55	2.6	53	77	13	142	9	14	0	76	1.02
81580--81683	37	2.8	39	81	12	103	9	15	0	75	1.05
81614--81703	31	2.8	32	78	9	87	11	14	0	74	1.07

Tables:   1

The End!