genome.fa.s5343.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005343.1 Hibiscus syriacus cultivar Beakdansim tig00012103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91994

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10004--10042	12	3.0	12	80	20	51	7	23	20	48	1.75
12346--12396	2	25.5	2	100	0	102	50	0	0	49	1.00
24605--24736	64	2.0	65	95	1	239	27	16	29	26	1.97
25339--25382	23	1.9	23	85	0	61	29	0	2	68	1.02
26147--26184	16	2.4	16	86	4	60	52	0	7	39	1.31
26902--26936	16	2.2	16	89	0	52	28	8	8	54	1.60
27865--27909	23	2.0	23	95	0	81	35	2	4	57	1.31
30078--30167	40	2.3	40	88	1	128	62	5	10	22	1.47
32626--32689	31	2.1	31	88	5	94	53	10	9	26	1.66
35771--35873	45	2.3	44	85	3	134	33	20	21	25	1.97
35861--35937	20	3.7	20	77	14	75	27	23	24	24	2.00
36678--36722	2	22.5	2	95	0	81	48	0	0	51	1.00
37078--37180	30	3.4	30	95	0	179	25	20	23	31	1.98
38844--38891	17	2.8	17	80	3	51	56	4	0	39	1.19
38863--38947	31	2.7	31	85	7	102	49	1	2	47	1.22
38864--38948	42	2.0	41	82	6	100	49	1	2	47	1.22
39013--39081	20	3.5	21	79	13	76	42	0	5	52	1.25
46633--46700	33	2.1	33	94	0	118	29	5	26	38	1.80
47397--47421	2	12.5	2	100	0	50	48	0	0	52	1.00
53392--53486	33	2.9	33	79	0	91	29	27	25	17	1.98
55625--55790	60	2.8	60	81	5	158	32	22	4	39	1.75
58735--58765	16	1.9	16	100	0	62	54	6	12	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68686--68722	19	1.9	19	94	0	65	32	24	16	27	1.96
68804--68879	21	3.7	21	77	10	93	36	25	18	19	1.94
68826--68936	20	5.5	20	82	6	125	27	27	20	23	1.99
68805--68899	41	2.3	41	94	0	163	34	26	17	21	1.95
69756--69809	24	2.2	24	93	0	90	20	18	20	40	1.91
69999--70035	14	2.6	14	91	4	56	51	21	21	5	1.68
72065--72095	12	2.6	12	100	0	62	48	25	9	16	1.76
72153--72435	140	2.0	140	95	0	512	28	11	15	44	1.81
72448--72570	20	6.4	20	78	13	134	35	23	17	22	1.95
72406--72549	54	2.7	54	87	0	216	36	22	15	25	1.94
72448--72570	40	3.2	39	79	13	148	35	23	17	22	1.95
72448--72619	74	2.3	74	82	4	206	36	22	18	23	1.95
72609--72705	40	2.4	40	91	0	158	12	18	24	44	1.84
72609--72692	20	4.2	20	95	0	150	13	19	22	45	1.84
72781--72889	36	3.3	36	69	21	119	53	15	3	27	1.59
72810--72919	27	3.7	27	71	19	94	52	18	1	27	1.55
72758--72922	63	2.6	63	94	3	276	52	17	3	27	1.59
74297--74390	42	2.2	42	83	7	111	22	19	36	22	1.95
74297--74366	21	3.3	21	75	0	68	21	20	35	22	1.96
74312--74398	21	4.1	21	75	5	86	24	19	36	19	1.95
74872--74914	19	2.2	20	83	4	52	48	23	13	13	1.79
74901--74969	20	3.5	20	87	0	102	36	26	20	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74974--75012	19	2.0	20	90	5	62	51	20	15	12	1.76
75013--75050	20	1.9	20	88	0	58	15	21	18	44	1.86
77052--77123	20	3.7	20	79	3	92	44	25	16	13	1.85
77049--77123	39	1.9	39	97	0	141	46	24	16	13	1.82
77110--77138	14	2.1	14	100	0	58	34	27	20	17	1.95
77508--77561	22	2.5	22	84	0	72	16	18	42	22	1.89
77698--77854	21	7.6	21	83	10	191	24	17	25	33	1.96
77698--77854	41	3.8	42	89	5	191	24	17	25	33	1.96
77698--77854	62	2.5	62	92	3	255	24	17	25	33	1.96
77697--77895	20	9.8	20	75	9	104	24	16	26	33	1.96
77869--77916	19	2.5	19	86	3	60	20	12	29	37	1.90

Tables:   1

The End!