Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005346.1 Hibiscus syriacus cultivar Beakdansim tig00012112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89141

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
587--632
2
24.5
2
79
20
55
52
2
0
45
1.13
7136--7316
64
2.8
63
82
3
209
27
16
26
29
1.97
7264--7314
19
2.7
19
79
8
61
25
13
35
25
1.93
7157--7316
65
2.5
65
85
3
207
27
15
26
30
1.96
13761--13800
21
1.9
21
85
10
55
35
10
2
52
1.48
15728--15908
64
2.8
63
83
3
218
27
17
26
29
1.97
15856--15906
19
2.7
19
85
8
70
25
15
35
23
1.94
15749--15908
65
2.5
65
86
3
216
27
16
26
30
1.97
15750--15957
65
3.2
63
79
14
210
27
17
25
30
1.97
33342--33547
80
2.6
80
91
1
324
35
13
16
33
1.88
33362--33486
41
3.1
40
72
7
137
36
14
17
31
1.90
33342--33553
39
5.3
39
75
6
201
35
12
17
33
1.88
33780--33913
41
3.3
40
76
5
153
36
14
17
32
1.89
33771--33984
80
2.7
80
88
2
306
35
12
17
34
1.87
33825--33977
39
3.9
39
75
6
164
39
12
16
31
1.86
34197--34401
41
5.2
39
71
8
137
36
12
16
35
1.86
34207--34336
41
3.2
41
72
4
138
37
15
15
31
1.89
34194--34393
80
2.5
80
90
1
312
37
13
16
33
1.86
33328--34614
423
3.0
425
96
1
2391
28
16
18
36
1.93
47873--47917
23
2.0
23
86
0
63
26
28
24
20
1.99
54684--54728
23
2.0
23
82
8
56
26
28
22
22
1.99
57410--57452
19
2.4
19
84
7
63
37
9
23
30
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58571--58640
7
10.1
7
74
9
54
22
0
32
44
1.53
58571--58640
14
5.1
14
80
3
79
22
0
32
44
1.53
58751--58813
11
5.9
11
73
14
60
39
1
1
57
1.18
62257--62296
18
2.2
19
86
4
55
67
7
2
22
1.28
62270--62402
72
1.9
70
81
6
160
46
9
7
36
1.65
62313--62446
70
1.9
70
82
10
166
42
11
8
37
1.72
63792--63816
6
4.2
6
100
0
50
68
0
0
32
0.90
63779--63828
20
2.5
21
77
9
59
56
0
0
44
0.99
83936--84016
41
2.0
41
83
9
103
50
1
3
44
1.27

Tables:   1

The End!