Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000535.1 Hibiscus syriacus cultivar Beakdansim tig00001032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63693

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
165--214
16
3.1
16
82
8
57
26
26
8
40
1.83
2245--2302
27
2.1
28
83
3
73
18
12
10
58
1.61
3521--3552
16
2.0
16
100
0
64
56
6
25
12
1.59
3874--3948
28
2.8
28
83
6
91
29
16
5
49
1.67
3977--4291
117
2.7
116
84
3
402
22
16
16
44
1.86
12800--12830
16
1.9
16
93
0
53
45
19
16
19
1.86
21054--21278
36
6.3
36
79
11
200
45
1
8
44
1.42
21152--21200
26
1.9
25
91
4
80
46
2
6
44
1.39
21192--21278
37
2.4
39
81
9
103
47
1
9
42
1.43
21125--21276
69
2.2
66
80
11
171
47
1
7
42
1.44
21280--21328
15
3.3
15
80
8
64
26
0
0
73
0.83
21288--21328
18
2.3
17
84
12
55
26
0
0
73
0.84
21279--21316
12
3.2
12
82
10
51
28
0
0
71
0.87
21285--21354
33
2.2
32
82
10
88
24
1
1
72
1.00
21294--21336
18
2.3
18
88
4
59
23
2
2
72
1.08
22495--22524
16
1.9
16
93
6
53
16
3
0
80
0.85
22492--22535
14
3.0
15
84
12
56
18
4
0
77
0.94
22569--22665
22
4.4
22
71
14
83
20
8
3
68
1.30
22617--22663
21
2.2
21
88
7
69
12
12
4
70
1.31
28253--28484
85
2.7
84
86
4
297
37
20
17
25
1.94
29322--29381
2
30.0
2
100
0
120
50
0
0
50
1.00
29346--29554
63
3.3
62
86
8
235
46
2
6
44
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29372--29628
37
7.4
36
74
21
205
46
3
8
42
1.49
29399--29529
28
4.4
28
80
19
167
45
3
7
43
1.50
29427--29628
37
5.6
37
81
14
262
46
2
8
42
1.49
29399--29461
26
2.3
26
94
5
108
46
1
7
44
1.42
29483--29543
28
2.2
28
85
5
79
47
3
8
40
1.49
29389--29568
65
2.8
65
90
5
292
46
3
7
42
1.51
29648--29689
9
4.6
9
91
5
66
26
0
0
73
0.83
29648--29689
19
2.3
18
91
4
66
26
0
0
73
0.83
29648--29699
16
3.2
16
82
12
54
25
1
1
71
1.07
29654--29702
19
2.5
19
86
3
62
26
2
2
69
1.10
30827--30866
18
2.4
18
88
12
59
12
5
0
82
0.82
30832--30874
22
2.0
22
86
9
61
16
6
0
76
0.99
30899--30971
18
4.4
18
73
23
79
12
12
4
71
1.28
30894--30956
30
2.1
30
100
0
126
12
9
3
74
1.17
30966--30992
14
1.9
14
100
0
54
33
0
0
66
0.92
33970--34004
18
1.9
18
100
0
70
45
5
0
48
1.26
37738--37782
22
2.0
22
82
0
54
46
17
2
33
1.61
43159--43191
16
2.1
16
94
0
57
0
33
0
66
0.92
43992--44020
8
3.6
8
100
0
58
86
0
0
13
0.58
53451--53485
2
17.5
2
100
0
70
48
0
0
51
1.00
53850--53973
63
2.0
62
87
4
178
33
20
18
28
1.96
53849--53976
31
4.1
31
78
9
134
34
20
17
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54713--54874
63
2.6
62
82
6
191
24
23
20
32
1.98
56304--56397
31
3.0
31
93
3
154
38
23
19
19
1.93
59843--59898
3
18.7
3
85
7
78
37
0
1
60
1.07

Tables:   1

The End!