Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005350.1 Hibiscus syriacus cultivar Beakdansim tig00012146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53749

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13374--13437
28
2.3
28
94
0
110
20
17
21
40
1.91
15751--15812
31
2.0
32
87
3
90
50
8
6
35
1.58
17792--17833
22
2.0
22
90
4
68
66
0
2
30
1.04
17793--17837
21
2.2
22
80
11
60
68
0
2
28
1.01
17990--18025
16
2.2
16
100
0
72
61
0
8
30
1.26
18041--18093
17
3.4
16
70
24
51
18
22
39
18
1.92
18054--18085
12
2.7
12
95
0
55
18
21
37
21
1.94
18087--18157
19
3.7
19
86
5
99
23
29
26
19
1.98
18103--18155
9
5.7
9
82
8
70
26
32
26
15
1.95
18864--19334
4
118.2
4
99
0
928
25
0
24
49
1.50
20848--20884
7
5.4
7
93
6
67
24
29
29
16
1.96
20874--20914
17
2.4
17
95
0
73
17
24
41
17
1.89
20908--20977
19
3.7
19
88
3
88
25
28
25
20
1.99
20910--20977
9
7.1
10
68
9
52
26
29
23
20
1.99
22947--22999
17
3.4
16
70
24
51
18
22
39
18
1.92
22960--22991
12
2.7
12
95
0
55
18
21
37
21
1.94
22993--23063
19
3.7
19
83
5
90
25
29
25
19
1.99
23013--23061
9
5.2
9
80
9
62
26
30
26
16
1.97
23783--24868
4
272.5
4
99
0
2144
25
0
24
50
1.50
25505--25532
12
2.3
12
100
0
56
60
0
25
14
1.34
28581--28632
22
2.3
22
83
9
61
59
0
0
40
0.97
28805--28840
3
12.0
3
93
0
63
63
0
2
33
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30407--30463
3
18.3
3
85
7
78
61
0
0
38
0.96
30408--30471
25
2.8
24
84
11
80
59
0
0
40
0.97
30571--31018
46
9.8
46
94
0
772
36
18
20
25
1.95
31537--31597
25
2.4
25
100
0
122
32
11
14
40
1.82
37222--37967
370
2.0
371
99
0
1476
33
19
14
32
1.92
39213--39243
14
2.2
14
100
0
62
61
0
12
25
1.32
42354--42412
31
1.9
31
83
13
77
66
1
1
30
1.12
42387--42438
22
2.3
22
83
9
61
59
0
0
40
0.97
42600--42626
3
9.0
3
100
0
54
66
0
0
33
0.92
44133--44175
21
2.0
21
86
8
61
46
0
0
53
1.00
46360--46390
2
15.5
2
100
0
62
48
0
0
51
1.00
47552--47664
41
2.8
40
93
4
192
50
42
0
7
1.29

Tables:   1

The End!