Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005352.1 Hibiscus syriacus cultivar Beakdansim tig00012156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85210

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
776--830
20
2.7
20
78
16
60
25
21
21
30
1.98
2739--2791
19
2.8
18
82
5
61
28
0
3
67
1.07
2746--2789
16
2.8
16
78
0
52
31
0
2
65
1.05
4175--4205
15
2.1
15
93
0
53
45
0
0
54
0.99
6236--6300
30
2.2
30
88
0
103
38
15
27
18
1.91
6498--6535
7
5.3
7
87
6
58
13
15
10
60
1.59
6498--6535
15
2.6
14
91
4
58
13
15
10
60
1.59
6606--6683
34
2.3
35
82
10
90
19
12
5
62
1.48
9212--9246
17
2.1
17
88
0
52
71
0
20
8
1.11
9871--9931
32
1.9
32
93
0
104
44
18
16
21
1.87
14413--14834
113
3.7
113
89
1
616
37
13
20
29
1.90
15324--15373
3
18.0
3
80
15
54
32
0
2
66
1.03
15328--15371
16
2.8
16
82
0
52
31
0
2
65
1.05
15320--15373
19
2.9
18
78
8
63
31
0
1
66
1.02
24177--24262
24
3.6
24
96
0
154
45
1
30
23
1.60
25869--25913
19
2.4
19
88
7
65
60
0
0
40
0.97
29776--29975
96
2.1
96
87
0
292
40
18
15
26
1.90
35594--35625
17
1.9
17
93
6
57
40
0
6
53
1.26
35629--35821
38
5.3
36
73
18
136
41
4
8
45
1.53
35609--35813
73
2.9
74
78
15
193
40
4
8
46
1.54
35716--35838
34
3.7
32
72
17
97
43
3
5
47
1.43
37208--37239
13
2.5
13
95
5
57
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37208--37239
6
5.2
6
92
7
55
31
0
0
68
0.90
40992--42052
106
10.0
106
93
0
1786
33
24
17
23
1.96
42326--42701
36
10.4
36
90
0
545
25
24
14
36
1.93
42581--42645
21
3.4
21
68
24
70
24
29
12
33
1.92
42650--42797
67
2.3
65
82
9
178
31
17
12
39
1.86
42755--42821
28
2.4
28
95
2
118
34
14
10
40
1.81
42824--43230
80
5.0
81
80
3
433
29
25
20
24
1.99
42824--43230
165
2.5
161
82
4
449
29
25
20
24
1.99
43930--44044
38
3.1
36
82
9
135
41
4
10
43
1.59
43948--44091
70
2.0
69
83
14
177
42
4
8
45
1.53
44022--44098
32
2.4
32
82
6
93
37
5
7
49
1.54
43919--44059
38
3.8
37
76
11
128
40
4
10
43
1.61
44041--44132
31
2.9
32
76
17
79
39
3
5
52
1.41
45517--45548
13
2.5
13
95
5
57
31
0
0
68
0.90
45517--45548
6
5.2
6
92
7
55
31
0
0
68
0.90
47658--47790
50
2.6
51
77
12
123
48
0
2
48
1.19
47919--47998
42
1.9
42
86
0
115
48
16
3
31
1.63
52159--52210
23
2.3
23
96
0
95
53
9
7
28
1.61
53961--54039
16
4.6
16
75
17
70
39
10
25
25
1.87
53982--54046
16
4.1
15
75
13
58
36
9
27
26
1.87
53977--54048
33
2.2
33
97
0
135
36
8
29
26
1.86
57862--57921
11
5.5
11
80
4
77
20
1
16
61
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59793--59839
11
4.4
11
81
5
60
19
2
17
61
1.44
66406--66439
15
2.3
15
94
0
59
14
20
11
52
1.73
72440--72509
36
1.9
37
88
2
106
38
12
7
41
1.71
80957--81001
3
15.3
3
95
4
83
68
0
0
31
0.89
81550--81677
40
3.2
40
93
0
193
56
15
3
24
1.56
81583--81651
20
3.5
20
68
7
68
59
14
2
23
1.49
81603--81671
20
3.5
20
66
7
59
60
18
1
18
1.43

Tables:   1

The End!