genome.fa.s5353.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005353.1 Hibiscus syriacus cultivar Beakdansim tig00012157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67674

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3740--3809	12	5.8	12	74	12	63	17	17	15	50	1.79
3703--3811	24	4.5	24	79	6	114	19	17	14	48	1.81
8283--8370	24	3.7	24	75	3	70	23	13	14	47	1.80
12276--12308	17	1.9	17	93	0	57	36	9	12	42	1.74
15277--15408	24	5.5	24	83	7	133	40	18	13	27	1.88
15325--15425	48	2.1	48	81	3	114	44	17	13	23	1.85
20356--20484	24	5.4	24	87	5	118	39	19	11	29	1.87
20378--20487	24	4.6	24	88	4	159	39	19	13	28	1.89
25928--25962	11	3.0	12	83	8	54	45	5	8	40	1.58
26196--26227	11	2.9	11	100	0	64	37	0	15	46	1.46
26184--26232	18	2.7	18	84	6	55	34	0	18	46	1.49
26340--26408	27	2.4	27	83	9	75	40	7	7	44	1.60
26340--26378	15	2.6	15	79	0	51	38	12	7	41	1.72
26351--26436	30	3.0	28	79	6	75	37	5	10	46	1.62
27109--27207	27	3.6	26	73	10	83	41	5	6	47	1.50
27109--27215	56	1.9	54	83	14	137	42	5	6	45	1.53
27385--27450	27	2.4	27	92	0	105	45	7	7	39	1.61
27428--27465	7	5.6	7	84	6	51	42	2	7	47	1.46
27428--27465	20	1.9	20	88	0	58	42	2	7	47	1.46
27460--27527	24	2.8	24	78	14	68	45	5	5	42	1.52
27425--27569	33	4.3	32	72	22	93	44	6	6	43	1.54
27601--27658	2	29.0	2	89	6	91	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29903--29950	20	2.5	18	83	12	60	22	27	18	31	1.97
29903--29951	19	2.5	21	87	9	68	22	28	18	30	1.97
32055--32086	15	2.1	15	94	0	55	37	9	6	46	1.61
33684--33753	12	5.8	12	76	6	70	15	12	18	52	1.74
33685--33757	24	3.0	24	77	0	92	17	10	17	53	1.72
34252--34293	22	2.0	21	86	13	59	64	7	0	28	1.20
35376--35424	17	2.7	18	87	6	55	24	2	2	71	1.07
35385--35424	3	13.3	3	84	10	55	27	0	0	72	0.85
35385--35432	16	3.2	15	88	8	71	27	0	2	70	0.98
35389--35432	22	2.0	22	86	8	63	27	0	2	70	0.99
35390--35432	12	3.5	13	87	6	54	27	0	2	69	1.00
35492--35691	25	8.0	25	100	0	400	36	20	16	28	1.93
36198--36264	19	3.5	19	74	20	52	76	5	13	4	1.13
36191--36273	24	3.8	22	69	12	62	74	4	16	3	1.13
40754--40825	26	3.0	25	73	18	82	26	22	12	38	1.89
41418--41478	12	5.1	12	77	0	50	67	14	13	4	1.39
41450--41483	12	2.8	12	90	0	59	73	11	8	5	1.24
42666--42740	12	5.6	12	70	22	51	48	26	0	25	1.52
42665--42740	16	5.2	16	75	23	87	48	26	0	25	1.51
42665--42740	28	2.7	28	95	0	134	48	26	0	25	1.51
43105--43203	36	2.8	36	96	0	180	35	16	11	37	1.84
43326--43554	101	2.3	98	81	10	250	31	19	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43527--43624	36	2.8	34	78	9	101	34	19	13	32	1.90
43870--43964	29	3.4	29	88	4	142	28	9	14	47	1.76
44127--44348	120	1.9	118	81	7	270	31	13	11	44	1.78
44353--44432	40	2.0	40	85	4	108	31	20	12	36	1.89
44528--44571	15	2.9	15	93	0	70	31	20	4	43	1.72
44577--44731	64	2.5	62	78	3	168	29	14	14	41	1.86
44772--44941	67	2.6	65	82	4	207	24	21	16	37	1.93
45053--45381	40	7.8	40	70	17	177	24	30	19	25	1.98
45133--45330	46	4.5	46	73	13	173	24	29	19	26	1.99
45043--45203	83	1.9	83	84	7	214	24	31	19	24	1.98
45053--45380	129	2.5	129	90	1	507	24	30	19	25	1.98
45563--45611	17	2.7	18	87	6	55	24	2	2	71	1.07
45572--45611	3	13.3	3	84	10	55	27	0	0	72	0.85
45572--45619	16	3.2	15	88	8	71	27	0	2	70	0.98
45576--45619	22	2.0	22	86	8	63	27	0	2	70	0.99
45577--45619	12	3.5	13	87	6	54	27	0	2	69	1.00
45679--45778	25	4.0	25	100	0	200	36	20	16	28	1.93
48952--49042	32	2.9	32	80	11	91	53	7	7	30	1.57
49123--49165	19	2.2	19	83	8	50	39	6	9	44	1.64
50998--51051	20	2.7	20	91	5	83	25	16	35	22	1.95
54468--54522	20	2.8	20	91	5	85	25	16	34	23	1.95
54495--54550	12	5.0	12	75	16	57	26	14	32	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54488--54552	32	2.0	32	93	0	112	27	16	29	26	1.97
54710--54768	30	2.0	29	93	3	100	44	11	6	37	1.68
58866--58930	2	32.5	2	100	0	130	49	0	0	50	1.00
59714--59786	7	10.7	7	98	1	132	15	27	15	42	1.86
65104--65166	20	2.9	20	77	15	63	23	26	19	30	1.98
65104--65168	24	2.9	22	80	13	71	24	26	18	30	1.98
67077--67119	21	2.0	22	90	4	70	25	0	4	69	1.07

Tables:   1

The End!