genome.fa.s5355.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005355.1 Hibiscus syriacus cultivar Beakdansim tig00012164_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204580

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1473--1513	18	2.3	18	91	4	66	29	4	2	63	1.28
10455--10593	67	2.1	67	98	0	269	28	18	11	41	1.86
13488--13522	16	2.2	16	94	0	61	34	22	5	37	1.78
14401--14426	2	13.0	2	100	0	52	50	0	0	50	1.00
14501--14563	20	3.2	20	84	8	67	41	6	23	28	1.79
14862--14898	19	2.1	19	90	10	60	45	16	18	18	1.85
16984--17120	68	2.0	69	98	1	267	36	10	21	31	1.87
17405--17438	2	17.0	2	93	0	59	47	0	2	50	1.16
17746--17816	18	4.1	18	70	12	58	33	9	14	42	1.78
32571--32601	2	15.5	2	100	0	62	51	0	0	48	1.00
32658--32692	2	17.5	2	100	0	70	48	0	0	51	1.00
33153--33177	2	12.5	2	100	0	50	52	0	0	48	1.00
33748--34299	182	3.0	182	99	0	1086	30	19	13	35	1.91
35906--35933	13	2.2	13	100	0	56	21	14	7	57	1.61
40632--40679	2	24.0	2	100	0	96	50	0	0	50	1.00
47429--47473	21	2.1	21	87	0	63	31	28	24	15	1.96
48141--48235	31	3.1	31	80	3	111	26	17	21	34	1.95
52304--52348	21	2.1	21	87	0	63	31	28	24	15	1.96
53028--53135	31	3.5	31	79	3	103	24	18	22	35	1.96
53050--53156	31	3.5	30	79	6	90	24	18	24	32	1.97
54000--54205	100	2.1	100	97	0	385	41	16	9	33	1.79
54302--54491	95	2.0	95	94	2	337	45	10	17	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54764--54803	17	2.4	17	100	0	80	40	0	0	60	0.97
54825--54869	17	2.6	17	75	0	54	42	0	0	57	0.98
60785--60820	2	18.0	2	100	0	72	50	0	0	50	1.00
64079--64353	63	4.4	63	97	0	505	19	41	7	31	1.79
65257--65296	20	2.1	19	90	9	64	70	0	0	30	0.88
70082--70130	3	16.7	3	91	4	82	63	0	2	34	1.06
76879--77286	192	2.1	191	92	0	672	30	18	19	31	1.96
78382--78485	36	2.9	36	70	1	91	28	18	15	37	1.91
78343--78485	72	2.0	73	83	6	184	28	17	12	41	1.86
78609--78687	39	2.0	39	85	4	106	29	21	11	37	1.88
78586--78903	104	3.1	103	92	1	505	30	20	11	36	1.89
78803--78878	36	2.1	36	90	0	116	22	21	15	40	1.90
79078--79706	105	6.0	105	91	2	928	33	26	17	22	1.96
80244--80347	37	2.8	37	79	1	120	42	14	12	30	1.83
80678--80758	28	2.9	28	74	15	69	28	3	6	61	1.37
82757--82786	14	2.1	14	100	0	60	26	6	43	23	1.78
83768--83902	68	1.9	71	89	4	213	44	17	13	25	1.84
83768--83902	36	3.9	36	88	7	206	44	17	13	25	1.84
94516--94542	13	2.1	13	100	0	54	55	0	7	37	1.28
95067--95140	27	2.7	27	82	15	107	35	5	21	37	1.77
96915--96956	20	2.1	20	95	0	75	54	4	26	14	1.59
97451--97485	17	2.0	18	88	5	54	31	5	0	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103152--103222	21	3.5	21	90	3	101	45	15	19	19	1.86
103227--103264	20	1.9	20	88	0	58	39	7	21	31	1.82
103358--103409	21	2.5	20	81	9	61	36	15	15	32	1.89
111415--111441	2	13.5	2	100	0	54	51	0	0	48	1.00
113335--113381	22	2.1	23	88	4	69	23	12	25	38	1.90
115617--115652	2	18.5	2	94	5	65	52	0	0	47	1.00
117962--118105	60	2.4	60	81	4	166	33	19	4	42	1.72
126334--126414	38	2.1	38	84	4	101	46	6	1	45	1.35
133343--133421	38	2.1	38	85	4	106	37	12	1	48	1.50
137093--138912	911	2.0	911	100	0	3640	34	20	12	33	1.90
142176--142241	34	2.0	32	85	5	87	28	0	48	22	1.51
144009--144057	19	2.6	19	93	0	80	32	4	10	53	1.54
144107--144776	200	3.3	200	93	0	1119	35	13	18	32	1.90
146252--146285	12	2.8	12	86	0	50	41	8	32	17	1.80
146252--146286	18	1.9	18	88	0	52	40	11	31	17	1.85
148239--148294	29	1.9	29	92	0	94	35	21	8	33	1.85
149796--149865	20	3.5	20	90	0	113	42	20	18	18	1.89
149794--149887	40	2.4	39	80	7	109	42	22	17	18	1.89
150048--150092	20	2.2	20	96	0	81	11	22	24	42	1.86
150368--150425	20	2.8	20	80	12	64	22	15	18	43	1.88
150519--150582	20	3.2	20	81	0	83	21	17	17	43	1.87
150518--150609	40	2.3	40	88	0	130	23	16	17	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150539--150626	20	4.4	21	73	13	87	22	19	18	39	1.92
153212--153251	21	1.9	21	84	0	53	60	17	2	20	1.48
165792--165979	60	3.1	60	78	7	202	30	23	4	41	1.74
175229--175275	17	2.6	18	83	16	62	70	2	2	25	1.10
175863--175988	64	2.0	64	84	9	168	57	11	1	29	1.42
175918--176060	76	1.9	75	88	2	214	60	9	2	27	1.40
177852--177898	20	2.3	20	82	10	69	82	4	2	10	0.88
177853--177889	19	1.9	20	94	5	67	83	2	2	10	0.84
183933--183962	12	2.5	12	88	0	51	66	3	23	6	1.30
184116--184279	76	2.2	76	88	3	242	56	10	2	29	1.47
194140--194366	109	2.1	109	99	0	445	29	19	17	34	1.94
195757--195942	42	4.4	43	90	5	290	31	23	27	17	1.97
195726--195942	85	2.5	84	86	7	278	32	22	26	19	1.97
197868--197903	17	2.1	18	89	5	56	36	13	2	47	1.58
200098--200141	18	2.4	19	88	3	63	72	9	2	15	1.19
200083--200281	110	1.8	108	90	6	321	49	8	5	37	1.54
200208--200251	19	2.3	19	92	0	70	75	9	2	13	1.14
201942--201988	23	2.1	22	84	11	60	29	6	2	61	1.32

Tables:   1

The End!