Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005356.1 Hibiscus syriacus cultivar Beakdansim tig00012165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58883

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2350--2396
23
2.0
24
91
4
78
27
0
2
70
0.99
2585--2620
18
1.9
18
88
5
54
55
8
22
13
1.65
6098--6140
2
21.5
2
100
0
86
51
0
0
48
1.00
6230--6658
213
2.0
215
85
5
573
32
15
8
44
1.76
6443--7352
121
7.6
120
82
7
994
29
16
9
44
1.80
6443--7324
477
1.9
475
87
4
1321
29
16
9
44
1.80
7474--7523
20
2.4
21
83
12
59
32
2
2
64
1.16
19604--19639
18
2.0
18
94
0
63
58
0
0
41
0.98
19621--19645
13
1.9
13
100
0
50
44
0
0
56
0.99
25563--25592
15
2.0
15
93
0
51
46
10
6
36
1.64
27001--27043
21
2.0
21
86
0
59
30
27
25
16
1.97
27023--27173
66
2.2
68
85
2
198
27
27
27
17
1.98
27476--27547
29
2.5
29
93
0
117
38
9
12
38
1.76
27561--27620
30
2.0
31
90
3
95
36
6
23
33
1.81
27840--27906
22
3.0
22
100
0
134
19
26
26
26
1.99
33945--33987
21
2.0
21
86
0
59
30
27
25
16
1.97
33967--34117
66
2.2
68
85
2
198
27
27
27
17
1.98
34420--34491
29
2.5
29
93
0
117
38
9
12
38
1.76
34505--34564
30
2.0
31
90
3
95
36
6
23
33
1.81
34784--34850
22
3.0
22
100
0
134
19
26
26
26
1.99
35245--35278
17
2.0
17
100
0
68
35
5
23
35
1.79
36714--36773
17
3.7
15
76
14
50
53
0
1
45
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36932--36974
2
21.5
2
100
0
86
51
0
0
48
1.00
37037--37062
13
2.0
13
100
0
52
84
0
0
15
0.62
41467--41502
15
2.4
15
90
0
54
50
5
22
22
1.70
42505--42538
16
2.1
16
94
0
59
20
41
11
26
1.87
43334--43373
21
1.9
21
94
0
71
32
27
15
25
1.95
43335--43543
64
3.2
65
79
7
194
33
24
15
26
1.95
43515--43563
19
2.6
19
84
9
57
24
30
18
26
1.98
49354--49433
24
3.5
22
78
14
92
22
26
23
27
2.00
49816--49856
20
2.0
21
90
4
66
58
2
2
36
1.24
50754--50814
21
2.9
21
97
0
113
32
29
14
22
1.94
50776--50935
64
2.5
64
79
5
178
35
23
15
26
1.94
52250--52319
24
3.0
24
77
12
74
34
25
21
18
1.96
52294--52385
24
3.7
25
84
4
123
32
22
20
23
1.98
52286--52393
25
4.4
25
79
9
107
34
23
20
22
1.97
52544--52580
16
2.2
17
95
4
67
51
18
0
29
1.47

Tables:   1

The End!