genome.fa.s5358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005358.1 Hibiscus syriacus cultivar Beakdansim tig00012170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111903

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12272--12334	17	3.9	16	69	10	56	73	1	3	22	1.07
12589--12631	18	2.5	17	85	7	61	67	2	4	25	1.22
12988--13089	37	2.8	37	84	0	123	30	13	13	42	1.83
13633--14263	105	6.0	105	91	3	925	22	17	26	33	1.96
14463--14538	36	2.1	36	87	0	107	42	14	21	22	1.89
14438--14754	101	3.1	102	88	5	478	37	11	20	30	1.88
14871--14984	36	3.2	36	73	2	113	43	14	16	25	1.85
14825--15000	72	2.4	74	84	7	216	42	13	18	26	1.87
15552--15576	10	2.5	10	100	0	50	56	0	8	36	1.29
16150--16685	182	2.9	183	93	1	914	31	20	20	27	1.98
22560--22616	28	2.0	28	100	0	114	47	3	7	42	1.47
22708--22743	18	2.1	18	89	5	56	66	2	5	25	1.27
23113--23209	37	2.6	37	85	0	131	29	11	15	43	1.82
27584--27629	22	2.1	22	84	11	60	56	0	2	41	1.11
39316--39369	8	6.3	9	75	12	60	64	1	1	31	1.14
39318--39367	17	3.1	16	91	2	73	62	2	2	34	1.18
39328--39390	26	2.7	23	77	22	60	66	1	0	31	1.01
39420--39458	10	3.9	10	89	0	60	43	0	33	23	1.54
39920--39948	2	14.5	2	100	0	58	48	0	0	51	1.00
40663--40792	44	3.0	43	69	18	108	27	17	17	36	1.93
43194--43564	14	26.9	14	72	14	156	44	4	3	47	1.38
43348--43391	22	2.0	22	90	0	70	45	4	2	47	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43203--43557	28	12.9	28	75	10	216	43	4	3	48	1.40
43203--43557	42	8.3	42	76	11	292	43	4	3	48	1.40
45194--45307	32	3.6	32	87	0	174	37	25	23	13	1.91
45401--45472	31	2.5	28	84	13	85	22	43	20	13	1.87
45415--45496	31	2.6	31	92	0	137	25	41	19	13	1.88
46469--46610	73	2.0	72	83	6	180	30	11	18	38	1.87
56947--57065	48	2.6	44	81	10	148	39	7	21	31	1.81
63364--63528	48	3.5	48	92	3	257	38	7	20	33	1.80
67223--67301	35	2.3	35	97	0	149	31	8	18	40	1.82
72653--72810	21	7.8	20	72	7	86	38	25	17	18	1.92
72777--72931	40	3.8	40	82	4	186	37	26	18	18	1.93
72777--72930	20	7.7	20	80	7	168	37	26	18	18	1.93
73313--73383	33	2.2	33	92	0	115	11	22	18	47	1.80
73462--73571	21	5.8	20	74	17	108	45	18	24	11	1.83
73455--73571	41	3.1	38	81	14	145	46	17	25	11	1.81
73522--73578	14	3.7	14	75	20	60	43	22	24	8	1.81
73514--73594	33	2.5	33	95	0	144	46	22	22	8	1.78
73590--73673	19	4.7	19	80	14	106	10	22	22	44	1.84
73590--73695	52	2.0	52	96	0	194	10	23	20	45	1.82
75392--75859	93	5.1	93	98	0	895	22	12	19	45	1.83
75907--76034	19	7.3	19	73	19	107	45	28	17	8	1.78
75942--76034	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75907--76034	52	2.5	51	73	15	136	45	28	17	8	1.78
76030--76094	19	3.7	19	78	19	86	12	21	20	46	1.83
76035--76127	33	2.8	33	91	0	150	11	21	20	46	1.82
76099--76145	19	2.4	19	85	3	58	14	17	23	44	1.85
78069--78104	14	2.6	14	95	0	63	33	0	22	44	1.53
78211--78289	19	4.4	19	80	16	105	45	17	22	13	1.84
78229--78307	34	2.4	34	95	2	142	41	18	26	12	1.87
78298--78538	19	13.7	19	78	17	279	14	21	17	45	1.85
78298--78552	52	4.9	52	78	14	201	14	21	18	45	1.85
78304--78552	33	7.2	33	80	12	245	14	21	18	46	1.84
81760--82030	20	13.5	20	84	2	292	19	16	24	39	1.92
81760--82030	40	6.8	40	88	3	330	19	16	24	39	1.92
82017--82099	21	4.0	21	73	6	78	25	16	24	33	1.96
81997--82095	42	2.4	43	77	11	100	21	18	23	37	1.94
86482--86565	31	2.7	32	92	3	152	36	4	4	53	1.43
86915--87071	64	2.5	64	76	15	155	34	19	19	27	1.95
87427--87451	12	2.1	12	100	0	50	36	8	24	32	1.84
87450--87588	29	4.8	29	94	1	244	46	16	20	17	1.85
89506--89573	24	3.0	23	74	19	63	33	0	1	64	1.02
89504--89568	8	8.0	8	72	16	53	33	0	1	64	1.03
89527--89568	17	2.4	19	80	15	54	33	0	2	64	1.07
103934--103972	14	2.8	14	84	0	51	35	28	12	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104298--104349	3	17.3	3	100	0	104	34	0	0	65	0.93
107819--107850	12	2.4	14	90	10	50	28	3	0	68	1.04
107983--108018	18	1.9	19	88	5	56	33	0	2	63	1.08

Tables:   1

The End!