Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005359.1 Hibiscus syriacus cultivar Beakdansim tig00012171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43772

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--331
20
3.7
21
76
13
86
26
25
25
23
2.00
237--306
20
3.5
20
75
12
54
30
24
21
24
1.99
237--332
42
2.3
41
85
7
124
29
26
21
22
1.99
237--349
41
2.7
42
78
6
115
27
25
23
23
2.00
2938--3147
65
3.3
63
79
11
210
30
24
18
26
1.97
2988--3167
65
2.8
63
81
9
159
29
25
18
27
1.98
12055--12119
32
2.0
32
87
0
94
43
1
13
41
1.54
12476--12529
7
7.7
7
100
0
108
42
0
29
27
1.56
13662--13696
16
2.1
17
94
5
63
31
8
25
34
1.86
17745--17774
15
2.0
15
93
0
51
30
6
16
46
1.73
19365--19423
14
4.3
14
72
20
52
69
1
3
25
1.13
19664--19697
17
2.1
17
88
5
52
64
2
5
26
1.30
25644--25749
31
3.4
31
92
0
158
20
12
14
52
1.73
28323--28384
27
2.3
27
94
0
106
17
25
38
17
1.92
30501--30547
24
1.9
25
86
4
69
6
19
0
74
1.03
30502--30572
36
2.0
34
84
10
90
7
18
0
74
1.03
30503--30559
30
1.9
29
82
10
71
7
19
0
73
1.05
31210--31256
21
2.4
19
85
7
58
8
14
0
76
1.01
36507--36544
20
1.9
19
89
5
58
18
7
0
73
1.06

Tables:   1

The End!