genome.fa.s536.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000536.1 Hibiscus syriacus cultivar Beakdansim tig00001033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82734

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2261--2301	9	4.6	9	84	0	55	21	21	0	56	1.43
5774--5807	7	4.7	7	85	7	50	88	0	11	0	0.52
5770--5807	15	2.4	16	95	4	69	86	0	13	0	0.56
6983--7045	20	3.2	20	64	20	51	39	9	22	28	1.85
7123--7663	121	4.5	121	81	5	581	37	14	20	27	1.91
7331--7395	20	3.3	20	67	26	57	40	12	20	27	1.88
6935--7588	242	2.8	241	84	6	693	38	14	20	27	1.91
7685--7736	27	1.9	27	96	0	95	38	19	21	21	1.94
7730--7793	18	3.6	18	91	2	103	43	14	21	20	1.87
7911--7985	3	25.0	3	89	5	116	32	0	1	66	1.00
9749--9800	15	3.6	15	87	5	72	25	1	3	69	1.16
11813--12385	139	4.2	139	84	4	685	29	13	14	42	1.84
11813--12385	277	2.1	275	82	3	679	29	13	14	42	1.84
12540--12588	22	2.2	22	100	0	98	22	16	14	46	1.82
13483--13702	80	2.7	80	80	4	215	31	20	16	32	1.94
13472--13857	82	4.7	80	77	5	245	31	18	16	33	1.93
13562--13859	82	3.6	82	78	5	253	31	18	16	34	1.93
13629--13911	82	3.4	81	76	8	216	30	18	16	33	1.94
17361--17403	11	3.8	11	81	6	50	67	13	9	9	1.42
26381--26664	42	6.7	42	77	7	277	28	23	16	31	1.96
26380--26684	85	3.6	83	85	4	351	28	22	17	31	1.96
26377--26664	127	2.3	127	83	4	357	28	23	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28157--28213	28	2.0	28	86	6	80	33	22	12	31	1.91
28406--28441	2	18.0	2	100	0	72	50	0	50	0	1.00
29340--29384	3	15.0	3	90	0	72	35	2	0	62	1.08
30852--30905	22	2.4	23	79	14	60	25	1	12	59	1.44
31024--31109	29	2.9	30	82	6	104	12	11	11	63	1.51
37540--37590	2	27.0	2	77	18	56	54	1	0	43	1.11
37533--37669	13	9.6	13	71	21	64	51	5	4	38	1.44
37533--37591	27	2.1	28	93	3	102	55	3	0	40	1.16
37678--39616	5	392.2	5	97	2	3658	60	20	0	19	1.37
39606--39636	16	1.9	16	93	0	53	61	9	0	29	1.28
44677--44761	44	1.9	44	87	0	125	57	7	17	17	1.61
53005--53092	11	8.4	10	78	13	88	57	2	0	39	1.11
53005--53091	21	4.0	22	77	15	92	57	2	0	40	1.11
53013--53091	2	42.5	2	74	18	73	56	1	0	41	1.07
53191--53260	8	9.9	7	75	17	56	55	2	2	38	1.29
53191--53260	32	2.2	31	82	14	81	55	2	2	38	1.29
53207--53251	23	1.9	24	90	4	74	57	0	2	40	1.11
57677--57723	24	2.0	24	82	0	58	36	19	14	29	1.92
60008--60174	35	4.8	35	78	8	169	33	17	20	28	1.95
60012--60169	70	2.3	70	85	2	201	34	17	20	27	1.95
67056--67427	81	4.6	82	86	2	509	36	11	16	35	1.85
67056--67427	163	2.3	163	89	2	570	36	11	16	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67365--67488	61	2.0	60	86	4	169	37	14	12	36	1.83
67570--67632	25	2.4	25	84	5	81	28	31	1	38	1.67
68223--68263	16	2.5	16	88	4	64	39	34	12	14	1.84
72891--72958	21	3.1	22	82	6	93	16	17	29	36	1.92
76717--76765	20	2.5	20	96	0	89	44	10	16	28	1.80
82290--82359	34	2.2	31	89	7	104	21	31	15	31	1.95
82569--82608	21	1.9	22	90	10	66	12	10	40	37	1.77
82636--82676	20	2.1	19	86	9	55	26	26	21	24	2.00

Tables:   1

The End!