genome.fa.s5360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005360.1 Hibiscus syriacus cultivar Beakdansim tig00012172_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79837

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4431--4501	3	23.7	3	100	0	142	0	67	0	32	0.91
4768--5060	147	2.0	147	93	4	502	34	26	11	27	1.91
7056--7134	10	7.9	10	75	13	65	21	7	13	56	1.62
7067--7134	20	3.4	20	93	0	118	22	8	11	57	1.61
7122--7179	24	2.4	24	79	0	71	10	12	18	58	1.61
7655--8124	253	1.9	252	85	5	666	39	11	16	32	1.84
8178--8220	19	2.3	19	87	0	59	39	11	18	30	1.86
8321--8483	71	2.2	72	84	7	197	44	7	12	35	1.71
8753--9054	101	3.0	100	87	4	421	36	13	13	37	1.83
8753--9054	99	3.0	101	87	3	432	36	13	13	37	1.83
13319--13361	20	2.2	20	91	0	68	34	20	11	32	1.89
21516--21783	39	7.0	39	62	14	119	37	17	9	35	1.83
21501--21783	76	3.7	77	85	6	387	36	17	10	35	1.84
21644--21768	37	3.3	37	65	8	99	34	22	11	32	1.89
33845--33870	13	2.0	13	100	0	52	30	23	7	38	1.83
35706--35974	49	5.5	49	79	2	299	26	19	16	37	1.93
38343--38510	23	6.8	23	80	16	112	56	1	0	41	1.11
38342--38527	10	21.0	8	76	19	103	55	2	0	41	1.16
38362--38516	2	82.5	2	80	16	181	54	1	0	43	1.13
39402--39473	19	3.6	19	76	12	72	29	13	29	27	1.95
39799--40201	58	6.9	58	87	4	553	33	10	19	35	1.87
39799--40201	117	3.5	117	87	3	580	33	10	19	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42423--42570	39	3.8	39	75	12	126	18	21	11	47	1.80
54247--54292	20	2.3	20	88	3	67	36	26	0	36	1.57
58551--58597	21	2.2	21	80	0	67	21	21	17	40	1.91
58593--58659	20	3.3	20	87	0	98	38	23	14	22	1.92
58653--58719	20	3.3	20	81	8	91	41	25	13	19	1.88
58588--58767	40	4.5	39	75	14	127	40	22	13	23	1.90
58687--58779	19	4.7	20	82	6	100	39	22	11	25	1.88
58935--58971	16	2.4	16	86	8	51	29	5	0	64	1.15
61975--62010	18	2.0	18	94	0	63	55	25	2	16	1.55
62392--62435	20	2.1	22	91	8	74	15	22	20	40	1.90
62497--62546	14	3.8	13	77	17	59	28	8	20	44	1.79
62496--62545	25	2.0	25	96	0	91	30	8	18	44	1.78
62931--62967	18	2.1	18	89	0	56	29	5	10	54	1.57
62928--62975	24	2.0	24	87	0	69	33	4	12	50	1.59
64109--64162	28	1.9	28	84	0	72	48	20	0	31	1.50
64126--64162	14	2.6	14	100	0	74	48	21	0	29	1.50
65596--65694	42	2.4	42	81	6	128	22	19	34	24	1.96
65596--65694	21	4.7	21	75	8	94	22	19	34	24	1.96
67701--67739	14	2.8	14	92	0	60	10	7	30	51	1.64
68097--68154	22	2.6	22	84	10	66	13	17	41	27	1.87
68257--68436	20	8.9	20	76	10	161	21	16	22	39	1.92
68263--68434	61	2.8	59	85	6	195	22	15	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68283--68488	60	3.4	60	85	6	231	21	16	22	39	1.92
68444--68488	20	2.2	20	96	0	81	20	20	22	37	1.94
68344--68513	60	2.8	59	82	8	148	22	15	22	38	1.92
73102--73166	17	3.8	17	87	0	76	20	26	26	27	1.99
76719--76853	35	3.8	35	87	7	191	30	13	17	38	1.88
76829--76913	25	3.4	25	93	0	134	23	17	17	41	1.90

Tables:   1

The End!