Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005361.1 Hibiscus syriacus cultivar Beakdansim tig00012177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62547

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
645--724
23
3.6
23
77
16
96
27
23
22
26
2.00
2265--2308
21
2.1
21
82
0
52
9
38
15
36
1.80
3308--3414
45
2.4
45
84
4
144
30
19
19
29
1.97
4265--4318
19
2.8
19
100
0
108
22
35
16
25
1.95
4305--4333
15
1.9
15
100
0
58
20
27
24
27
1.99
4322--4444
64
1.9
65
88
5
187
32
19
17
30
1.95
4516--4567
21
2.5
21
90
0
77
21
25
23
30
1.99
11423--11464
6
7.0
6
86
0
57
35
33
14
16
1.89
11430--11464
12
2.9
12
100
0
70
40
34
8
17
1.80
15613--15679
3
23.3
3
85
8
95
34
0
1
64
1.03
15613--15679
14
4.7
14
87
3
98
34
0
1
64
1.03
15925--15959
18
1.9
18
88
0
52
28
48
14
8
1.73
16943--16968
5
5.2
5
100
0
52
19
0
0
80
0.71
22053--22398
153
2.3
153
96
0
647
29
13
12
43
1.82
22447--22566
36
3.4
34
90
4
177
35
17
11
35
1.86
22965--23053
30
3.0
30
83
5
126
29
11
14
44
1.80
23221--23327
29
3.5
29
74
17
90
25
14
15
44
1.84
23336--23696
135
2.7
135
86
3
494
27
29
17
25
1.97
23895--23943
3
17.3
3
79
12
59
32
4
0
63
1.13
23895--23953
11
5.3
11
72
23
52
32
3
0
64
1.10
23895--23943
14
3.5
13
89
10
71
32
4
0
63
1.13
23895--23950
14
3.9
15
85
2
64
32
3
0
64
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25216--25251
14
2.6
14
95
0
63
33
11
8
47
1.69
25609--25773
30
5.6
29
71
9
93
14
16
13
55
1.70
28843--28882
20
2.1
19
85
4
53
35
7
35
22
1.82
29026--29113
38
2.3
39
84
7
108
51
2
2
44
1.26
29832--29885
20
2.8
18
91
8
65
18
33
11
37
1.86
29838--29885
20
2.4
20
100
0
96
18
35
10
35
1.85
35679--35745
34
1.9
34
82
14
84
46
19
13
20
1.83
39556--39590
16
2.3
15
90
5
52
37
2
14
45
1.59
39717--39768
21
2.5
20
81
12
59
57
0
0
42
0.98
40591--40625
13
2.6
14
90
9
63
34
0
11
54
1.37
46442--46475
17
1.9
18
94
5
61
50
2
0
47
1.16
60660--60717
20
2.8
20
75
17
55
32
3
1
62
1.22

Tables:   1

The End!