Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005362.1 Hibiscus syriacus cultivar Beakdansim tig00012180_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58880

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1110--1227
32
3.8
32
81
9
154
33
17
17
30
1.94
1090--1255
63
2.7
63
96
0
298
34
17
17
30
1.93
1093--1280
31
6.0
31
77
6
182
32
18
18
30
1.95
1267--1338
30
2.4
30
92
0
117
23
20
25
30
1.99
8834--8896
22
3.0
20
86
11
83
26
33
23
15
1.95
29043--29084
21
2.0
22
85
4
59
69
4
7
19
1.31
31015--31094
23
3.5
22
73
11
63
46
12
13
27
1.80
31096--31154
30
2.0
30
86
0
82
61
22
3
13
1.47
31722--31768
23
2.0
23
84
8
60
48
0
6
44
1.28
31970--32025
29
1.9
29
82
7
69
50
0
3
46
1.19
32009--32033
13
1.9
13
100
0
50
60
0
0
40
0.97
32054--32080
3
9.0
3
100
0
54
66
0
0
33
0.92
33459--33492
4
8.5
4
100
0
68
76
0
0
23
0.79
33704--34233
217
2.3
221
90
7
816
29
18
15
37
1.91
33853--34491
122
5.3
122
82
5
816
27
19
15
38
1.91
34782--34888
22
4.9
22
94
0
169
33
14
17
34
1.90
34782--34906
44
2.9
43
86
6
166
33
13
17
35
1.89
34868--34911
18
2.4
18
96
0
79
36
11
15
36
1.84
35701--35738
18
2.1
18
100
0
76
52
5
10
31
1.58
36078--36134
11
5.0
11
80
19
55
14
1
3
80
0.92
36096--36133
15
2.6
14
88
8
58
13
0
5
81
0.85
37929--38506
295
2.0
295
98
0
1111
31
20
15
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47455--47501
23
2.0
23
84
8
60
48
0
6
44
1.28
47788--47826
3
13.0
3
100
0
78
66
0
0
33
0.92
58282--58314
2
17.5
2
87
12
52
51
0
0
48
1.00
58280--58310
15
2.1
15
100
0
62
51
0
0
48
1.00
58284--58314
13
2.4
13
94
0
53
51
0
0
48
1.00

Tables:   1

The End!