genome.fa.s5363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005363.1 Hibiscus syriacus cultivar Beakdansim tig00012181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65524

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282--357	37	2.1	37	94	0	134	48	17	6	27	1.71
2680--2709	2	15.0	2	100	0	60	50	0	0	50	1.00
4431--4506	36	2.1	36	85	7	102	35	17	21	26	1.95
7970--8008	20	2.0	20	89	0	60	33	10	23	33	1.88
15921--15959	20	2.0	20	89	0	60	33	10	23	33	1.88
17479--17514	17	2.1	17	89	0	54	19	13	16	50	1.79
19095--19208	20	5.7	20	83	6	113	31	25	18	24	1.97
19092--19208	61	1.9	61	85	0	162	33	24	17	23	1.97
19725--19791	19	3.5	19	85	2	89	47	25	16	10	1.78
19787--19952	20	9.1	19	73	16	127	12	22	22	42	1.87
19792--19868	39	2.0	39	84	5	102	10	19	25	44	1.83
19840--19927	33	2.6	33	92	1	140	11	25	25	38	1.89
22194--22247	24	2.2	24	90	0	81	38	20	16	24	1.92
23307--23364	20	2.9	20	77	10	64	41	20	18	18	1.91
23395--23450	19	2.9	19	97	0	103	14	21	14	50	1.78
23364--23478	52	2.2	52	82	0	131	19	21	20	39	1.93
23386--23412	14	1.9	14	100	0	54	14	22	14	48	1.81
23567--23603	14	2.6	14	86	0	56	48	21	0	29	1.50
25470--25536	19	3.5	19	83	4	89	37	23	23	14	1.93
25525--25582	14	3.9	14	79	16	71	48	25	17	8	1.75
25509--25587	32	2.4	33	95	2	142	46	24	18	10	1.80
25616--25673	14	3.9	14	79	16	71	10	17	24	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25599--25689	32	2.8	33	93	3	157	12	17	21	48	1.80
25683--25728	20	2.3	20	88	0	65	15	21	26	36	1.93
26203--26247	18	2.5	18	88	0	72	13	15	44	26	1.83
27860--27903	22	2.0	22	95	0	79	20	13	43	22	1.87
28091--28184	20	4.7	20	80	2	89	23	18	24	34	1.96
28071--28185	20	5.7	20	78	5	88	23	17	23	35	1.95
28174--28266	20	4.5	21	78	4	100	17	24	18	39	1.91
28113--28247	41	3.3	41	82	4	139	19	21	20	38	1.94
28174--28266	41	2.3	41	100	0	186	17	24	18	39	1.91
29088--29161	29	2.6	29	79	12	89	54	14	9	21	1.69
29554--29609	20	3.0	20	78	17	66	28	0	1	69	0.98
39950--40160	117	1.8	117	81	4	264	52	3	14	29	1.59
40168--40228	29	2.1	29	84	6	79	45	18	8	27	1.77
40617--40679	20	3.0	21	77	17	76	31	0	1	66	1.01
43467--43520	18	2.9	18	81	5	63	74	0	1	24	0.92
43467--43504	19	2.1	19	90	5	60	78	0	0	21	0.74
44944--45038	36	2.6	36	80	6	111	35	15	24	24	1.94
53084--53259	64	2.8	60	78	15	160	28	23	18	29	1.98
53035--53239	64	3.2	63	75	14	199	30	23	18	27	1.98
58973--59043	20	3.5	20	77	11	63	29	23	21	25	1.99
58973--59071	42	2.3	43	87	5	139	28	25	22	24	1.99
58992--59070	23	3.6	22	79	8	99	25	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58973--59089	43	2.8	42	81	3	128	27	24	23	23	2.00
61721--61879	62	2.5	63	82	6	187	30	25	18	26	1.98

Tables:   1

The End!