Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005364.1 Hibiscus syriacus cultivar Beakdansim tig00012189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66618
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:436 original size:30 final size:30
Alignment explanation
Indices: 400--471 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
390 CCCGAAGGAC
*
400 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
430 CTATCCAGAGGTCATAAAGATCCTCGGCAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
* *
460 CTGTCCATAGGT
1 CTATCCAGAGGT
472 TCCGAAGAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGCAA
Found at i:496 original size:31 final size:31
Alignment explanation
Indices: 458--645 Score: 168
Period size: 31 Copynumber: 6.0 Consensus size: 31
448 GATCCTCGGC
* *
458 AACTGTCCATAGGTTCCGAAGAACCTAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
**
489 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
* *
520 TATTGTCCATATG-TCTCGAA-AGACATAGGTA
1 AACTGTCCATATGTTC-CGAAGA-ACATAGGTA
* **
551 ATTCTGTCCATATGTTCCTTAGAACATAGGTA
1 A-ACTGTCCATATGTTCCGAAGAACATAGGTA
*
583 TACTGTCCATATG-TCTCGAA-AGACATAGGTA
1 AACTGTCCATATGTTC-CGAAGA-ACATAGGTA
* ** *
614 ATTCTGTCCATATGTTCCTTAGAATATAGGTA
1 A-ACTGTCCATATGTTCCGAAGAACATAGGTA
646 TACCCTCAAC
Statistics
Matches: 125, Mismatches: 22, Indels: 19
0.75 0.13 0.11
Matches are distributed among these distances:
30 6 0.05
31 71 0.57
32 42 0.34
33 6 0.05
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (31 bp):
AACTGTCCATATGTTCCGAAGAACATAGGTA
Found at i:564 original size:32 final size:31
Alignment explanation
Indices: 511--628 Score: 150
Period size: 32 Copynumber: 3.7 Consensus size: 31
501 GTTCCTTAGA
511 ACATAGGTATAT-TGTCCATATGTCTCGAAAG
1 ACATAGGTAT-TCTGTCCATATGTCTCGAAAG
***
542 ACATAGGTAATTCTGTCCATATGT-TCCTTAG
1 ACATAGGT-ATTCTGTCCATATGTCTCGAAAG
*
573 AACATAGGTATACTGTCCATATGTCTCGAAAG
1 -ACATAGGTATTCTGTCCATATGTCTCGAAAG
605 ACATAGGTAATTCTGTCCATATGT
1 ACATAGGT-ATTCTGTCCATATGT
629 TCCTTAGAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
31 35 0.47
32 39 0.53
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (31 bp):
ACATAGGTATTCTGTCCATATGTCTCGAAAG
Found at i:568 original size:63 final size:63
Alignment explanation
Indices: 483--648 Score: 298
Period size: 63 Copynumber: 2.7 Consensus size: 63
473 CCGAAGAACC
* *
483 TAGGTAA-ACTGTCCATATGTTCCTTAGAACATAGGTATATTGTCCATATGTCTCGAAAGACA
1 TAGGTAATTCTGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACA
545 TAGGTAATTCTGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACA
1 TAGGTAATTCTGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACA
*
608 TAGGTAATTCTGTCCATATGTTCCTTAGAATATAGGTATAC
1 TAGGTAATTCTGTCCATATGTTCCTTAGAACATAGGTATAC
649 CCTCAACTCT
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
62 7 0.07
63 93 0.93
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (63 bp):
TAGGTAATTCTGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACA
Found at i:1864 original size:45 final size:45
Alignment explanation
Indices: 1789--1895 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
1779 ATGCACTACC
* *
1789 GATGCATCGGTGCA-TAAAATGCATTCGATGTTGT-ATTATCACTGG
1 GATGCATCGATGCACT-AAATGCATTCGATGTT-TCATTATCAATGG
* * * * *
1834 GATGCATCGATGCACTAATTGTATTTGATGTTTCCTTATTAATGG
1 GATGCATCGATGCACTAAATGCATTCGATGTTTCATTATCAATGG
1879 GATGCATCGATGCACTA
1 GATGCATCGATGCACTA
1896 CTTATGCATC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 1 0.02
45 51 0.96
46 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (45 bp):
GATGCATCGATGCACTAAATGCATTCGATGTTTCATTATCAATGG
Found at i:1903 original size:64 final size:64
Alignment explanation
Indices: 1835--1972 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 64
1825 TATCACTGGG
* * * * * * *
1835 ATGCATCGATGCACTAATTGTATTTGATGT-TTCCTTATT-AATGGGATGCATCGATGCACTACT
1 ATGCATCGATGCACGAATTGCATTCGATGTATTCATT-TTAAAAGAG-TGCATCGATGCACTACC
*
1898 T
64 A
*
1899 ATGCATCGATGCACGAATTGCATTCGATGTATTTATTTTAAAAGAGTGCATCGATGCACTACCA
1 ATGCATCGATGCACGAATTGCATTCGATGTATTCATTTTAAAAGAGTGCATCGATGCACTACCA
1963 ATGCATCGAT
1 ATGCATCGAT
1973 ACACCTTCAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
64 55 0.87
65 8 0.13
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACGAATTGCATTCGATGTATTCATTTTAAAAGAGTGCATCGATGCACTACCA
Found at i:3437 original size:22 final size:21
Alignment explanation
Indices: 3408--3534 Score: 130
Period size: 21 Copynumber: 6.0 Consensus size: 21
3398 ATCTCATATA
3408 GGGGTATCGGTACCCTCTGGG
1 GGGGTATCGGTACCCTCTGGG
*
3429 GTGGGTATCAGTACCCTCT-GG
1 G-GGGTATCGGTACCCTCTGGG
*
3450 GGGGTATTGGTACCCTCTGGAG
1 GGGGTATCGGTACCCTCTGG-G
* *
3472 TGGGTATCGGTATCCTCTGGG
1 GGGGTATCGGTACCCTCTGGG
** * *
3493 GGGGTATATGTACCCTTTGGA
1 GGGGTATCGGTACCCTCTGGG
* **
3514 GGGTTATCTATACCCTCTGGG
1 GGGGTATCGGTACCCTCTGGG
3535 CAATCTTTCT
Statistics
Matches: 86, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
20 15 0.17
21 37 0.43
22 34 0.40
ACGTcount: A:0.13, C:0.20, G:0.36, T:0.30
Consensus pattern (21 bp):
GGGGTATCGGTACCCTCTGGG
Found at i:3467 original size:42 final size:42
Alignment explanation
Indices: 3408--3534 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
3398 ATCTCATATA
* *
3408 GGGGTATCGGTACCCTCTGGGGTGGGTATCAGTACCCTCTGG
1 GGGGTATTGGTACCCTCTGGAGTGGGTATCAGTACCCTCTGG
* *
3450 GGGGTATTGGTACCCTCTGGAGTGGGTATCGGTATCCTCTGGG
1 GGGGTATTGGTACCCTCTGGAGTGGGTATCAGTACCCTCT-GG
* *
3493 GGGGTATAT-GTACCCTTTGGAG-GGTTATCTA-TACCCTCTGG
1 GGGGTAT-TGGTACCCTCTGGAGTGGGTATC-AGTACCCTCTGG
3534 G
1 G
3535 CAATCTTTCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
41 3 0.04
42 49 0.66
43 21 0.28
44 1 0.01
ACGTcount: A:0.13, C:0.20, G:0.36, T:0.30
Consensus pattern (42 bp):
GGGGTATTGGTACCCTCTGGAGTGGGTATCAGTACCCTCTGG
Found at i:3528 original size:64 final size:64
Alignment explanation
Indices: 3409--3533 Score: 166
Period size: 64 Copynumber: 2.0 Consensus size: 64
3399 TCTCATATAG
*
3409 GGGTATCGGTACCCTCTGGGGTGGGTATCAGTACCCTCTGGGGGGTATTGGTACCCTCTGGAGT
1 GGGTATCGGTACCCTCTGGGGTGGGTATCAGTACCCTCTGGGGGGTATTGATACCCTCTGGAGT
* * *
3473 GGGTATCGGTATCCTCTGGGG-GGGTAT-ATGTACCCTTTGGAGGGTTATCT-ATACCCTCTGG
1 GGGTATCGGTACCCTCTGGGGTGGGTATCA-GTACCCTCTGG-GGGGTAT-TGATACCCTCTGG
3534 GCAATCTTTC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
62 1 0.02
63 16 0.30
64 36 0.67
65 1 0.02
ACGTcount: A:0.14, C:0.21, G:0.35, T:0.30
Consensus pattern (64 bp):
GGGTATCGGTACCCTCTGGGGTGGGTATCAGTACCCTCTGGGGGGTATTGATACCCTCTGGAGT
Found at i:7315 original size:3 final size:3
Alignment explanation
Indices: 7307--7345 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
7297 CACTATAGAT
7307 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA GTAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TA
7346 TTGGGATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7705 original size:16 final size:17
Alignment explanation
Indices: 7684--7717 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7674 TTTCAAAAAA
*
7684 AAATT-ATTTTTTAATT
1 AAATTAATTTTCTAATT
7700 AAATTAATTTTCTAATT
1 AAATTAATTTTCTAATT
7717 A
1 A
7718 TTAATCGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
AAATTAATTTTCTAATT
Found at i:7926 original size:60 final size:61
Alignment explanation
Indices: 7849--7977 Score: 154
Period size: 61 Copynumber: 2.1 Consensus size: 61
7839 CATATGTCTT
* * * * *
7849 CAAACTATAACTTTCA-TTT-AAATTTTATCCTTGAACTTTTGAATATTTTAATTTCATCTC
1 CAAACTATAACTCTCATTTTAAAATTAT-TCCTTAAACTTTTGAACATTCTAATTTCATCTC
* * *
7909 CAAACTATAAGTCTCATTTTAAAATTATTCCTTAAACTTTTGACCATTCTAATTTTATCTC
1 CAAACTATAACTCTCATTTTAAAATTATTCCTTAAACTTTTGAACATTCTAATTTCATCTC
*
7970 TAAACTAT
1 CAAACTAT
7978 GATTTTTTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
60 14 0.24
61 38 0.66
62 6 0.10
ACGTcount: A:0.33, C:0.18, G:0.03, T:0.46
Consensus pattern (61 bp):
CAAACTATAACTCTCATTTTAAAATTATTCCTTAAACTTTTGAACATTCTAATTTCATCTC
Found at i:8185 original size:60 final size:59
Alignment explanation
Indices: 8054--8217 Score: 152
Period size: 60 Copynumber: 2.7 Consensus size: 59
8044 ATATAATTAG
* * * *
8054 TTTAAAATTTGAGGATTAATTTAGAATGAAGGTCATAGTTTGAGGATGAAACCGGAATG
1 TTTAAAATTTAAGGATTAATTTAGAATGAAGGTCATAATTTGAGGATGAAACCGAAATA
* * * **
8113 TTCAAAAGTTTAAGGATTAATTTATAATTGTA-GTCATAATTT-AGAGATGAAATTGAAATA
1 TTTAAAA-TTTAAGGATTAATTTAGAA-TGAAGGTCATAATTTGAG-GATGAAACCGAAATA
* ** * *
8173 TTTAAAATTTTAAAGACCAATTTAAAATGAAGGTCATATTTTGAG
1 TTTAAAA-TTTAAGGATTAATTTAGAATGAAGGTCATAATTTGAG
8218 AAAATGTGAT
Statistics
Matches: 83, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
59 11 0.13
60 67 0.81
61 5 0.06
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (59 bp):
TTTAAAATTTAAGGATTAATTTAGAATGAAGGTCATAATTTGAGGATGAAACCGAAATA
Found at i:9158 original size:119 final size:119
Alignment explanation
Indices: 8947--9181 Score: 364
Period size: 119 Copynumber: 2.0 Consensus size: 119
8937 TGTCTTAAAT
* * * * *
8947 TTCATGTATGTCCATTCAATGTTATCACATACTTATAATCTAAAAATATATAAATGAAAGTAGAC
1 TTCATGTATGTCCATCCAATGTTACCACATAATTATAATCTAAAAATATATAAATAAAAATAGAC
* *
9012 TAATTATATTAATTAATTACTTCTCTTAAAATCATCAAATAACACAAATTATGG
66 TAATCATATTAATTAATCACTTCTCTTAAAATCATCAAATAACACAAATTATGG
* *
9066 TTCATGTATGTCGATCCAATGATTACCACATAATTATAATCTTAAAA-ATATAAATAAAAATAGA
1 TTCATGTATGTCCATCCAATG-TTACCACATAATTATAATCTAAAAATATATAAATAAAAATAGA
*
9130 CTAATCATATTAATTGATCACTTCTCTTAAAATCATCAAATAACACAAATTA
65 CTAATCATATTAATTAATCACTTCTCTTAAAATCATCAAATAACACAAATTA
9182 ATCACTAAAT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
119 83 0.79
120 22 0.21
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.35
Consensus pattern (119 bp):
TTCATGTATGTCCATCCAATGTTACCACATAATTATAATCTAAAAATATATAAATAAAAATAGAC
TAATCATATTAATTAATCACTTCTCTTAAAATCATCAAATAACACAAATTATGG
Found at i:30450 original size:16 final size:16
Alignment explanation
Indices: 30429--30465 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
30419 TTGGGAGAAG
30429 ACATCGAATCTTTCGT
1 ACATCGAATCTTTCGT
30445 ACATCGAATCTTTCGT
1 ACATCGAATCTTTCGT
30461 ACATC
1 ACATC
30466 TTCGTAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (16 bp):
ACATCGAATCTTTCGT
Found at i:33002 original size:13 final size:13
Alignment explanation
Indices: 32984--33010 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32974 ATAAACATAA
32984 AGGCTAATTTTGT
1 AGGCTAATTTTGT
32997 AGGCTAATTTTGT
1 AGGCTAATTTTGT
33010 A
1 A
33011 TTGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.44
Consensus pattern (13 bp):
AGGCTAATTTTGT
Found at i:40855 original size:14 final size:15
Alignment explanation
Indices: 40836--40864 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
40826 ATCCCCTCCT
40836 TAATGATTTC-TCTG
1 TAATGATTTCATCTG
40850 TAATGATTTCATCTG
1 TAATGATTTCATCTG
40865 CTACCAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (15 bp):
TAATGATTTCATCTG
Found at i:43930 original size:121 final size:120
Alignment explanation
Indices: 43706--43939 Score: 306
Period size: 121 Copynumber: 1.9 Consensus size: 120
43696 ATTTTTCACC
* * * *
43706 CCTTAACATTTGATCCGAGCTCCATCCCTGCCTCTCGATAATCTCCTCTCGACATCAATGAGGGT
1 CCTTAACATTTGATCCGAGCTCCATCCCTGCCTCTCAATAACCTCCTCTCAACATCAATAAGGGT
* * * *
43771 GTAAAAGAGGAACTCAAGGTTAATCACCATCCGCTCTTTTTTCAAATTTTGCCCA
66 GTAAAAGAGGAACTCAAGGTTAATCAACATACACTCTTTATTCAAATTTTGCCCA
* * * * * *
43826 CCTTAACGTTTGATCCTAGCTCCATCCCTGTCTCTTAATAACCTCCTTTTTAACATCAATAAGGG
1 CCTTAACATTTGATCCGAGCTCCATCCCTGCCTCTCAATAACCTCC-TCTCAACATCAATAAGGG
* * *
43891 TGTAAAAGAGGAACTCAAGGTTAATTAACGTACATTCTTTATTCAAATT
65 TGTAAAAGAGGAACTCAAGGTTAATCAACATACACTCTTTATTCAAATT
43940 AAAATAGATA
Statistics
Matches: 96, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
120 40 0.42
121 56 0.58
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (120 bp):
CCTTAACATTTGATCCGAGCTCCATCCCTGCCTCTCAATAACCTCCTCTCAACATCAATAAGGGT
GTAAAAGAGGAACTCAAGGTTAATCAACATACACTCTTTATTCAAATTTTGCCCA
Found at i:45071 original size:17 final size:18
Alignment explanation
Indices: 45049--45082 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
45039 TAAAATTATA
45049 ATTAATTTT-AATAAATG
1 ATTAATTTTAAATAAATG
45066 ATTAATTTTAAATAAAT
1 ATTAATTTTAAATAAAT
45083 TCTTATACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
ATTAATTTTAAATAAATG
Found at i:45260 original size:14 final size:16
Alignment explanation
Indices: 45227--45264 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
45217 ATTTTTTATT
*
45227 AAAAGAGAAGGAAGGA
1 AAAAGAGAAGAAAGGA
45243 AAAAGA-AAGAAAGGA
1 AAAAGAGAAGAAAGGA
45258 AAAAGAG
1 AAAAGAG
45265 TAGTAGTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AAAAGAGAAGAAAGGA
Found at i:45608 original size:13 final size:13
Alignment explanation
Indices: 45590--45616 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45580 CTTCCCTTTA
45590 ACATCACATCCAC
1 ACATCACATCCAC
45603 ACATCACATCCAC
1 ACATCACATCCAC
45616 A
1 A
45617 AAAGCAAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (13 bp):
ACATCACATCCAC
Found at i:50997 original size:21 final size:19
Alignment explanation
Indices: 50955--50997 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
50945 CTAAATTGCA
*
50955 AAAAGAATAAATTTATGGT
1 AAAAGAATAAATTAATGGT
*
50974 AAAAGAATATGAATTAATGTT
1 AAAAGAATA--AATTAATGGT
50995 AAA
1 AAA
50998 TATGTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
21 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (19 bp):
AAAAGAATAAATTAATGGT
Found at i:51472 original size:16 final size:16
Alignment explanation
Indices: 51440--51486 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
51430 TAGATTATTA
* *
51440 ATAAAAAA-ATAATAT
1 ATAAAAAATTTAAAAT
51455 ATAAAAAATTTAAAAT
1 ATAAAAAATTTAAAAT
*
51471 ATAATAGAATTTAAAA
1 ATAA-AAAATTTAAAA
51487 ATTTACTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 8 0.30
16 9 0.33
17 10 0.37
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
ATAAAAAATTTAAAAT
Done.