Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005365.1 Hibiscus syriacus cultivar Beakdansim tig00012196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111857

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24737--24797
19
3.3
18
73
17
63
4
14
29
50
1.64
34455--34479
4
6.2
4
100
0
50
0
28
0
72
0.86
41747--41812
29
2.2
30
91
2
107
36
10
3
50
1.53
42220--42259
3
13.3
3
100
0
80
67
0
0
32
0.91
43146--43170
2
12.5
2
100
0
50
52
0
0
48
1.00
44270--44305
3
12.7
3
88
11
58
33
0
0
66
0.92
53259--53417
36
4.4
36
86
3
178
35
23
18
22
1.96
53602--54474
104
8.3
104
84
6
932
32
19
25
23
1.97
53614--54431
158
5.2
156
85
6
996
32
19
25
22
1.97
53614--54464
262
3.3
258
85
6
1119
32
19
25
22
1.97
54720--54755
3
12.7
3
88
11
58
33
0
0
66
0.92
58013--58044
2
16.0
2
100
0
64
50
0
0
50
1.00
65348--65373
12
2.2
12
100
0
52
30
19
0
50
1.48
69930--71161
106
11.6
106
95
0
2108
33
24
18
23
1.96
74199--74236
19
1.9
21
89
10
62
68
0
2
28
1.03
79960--80038
27
2.9
27
90
0
131
27
15
12
44
1.82
81171--81225
20
2.8
20
75
5
58
41
0
7
50
1.30
89576--89613
3
12.7
3
100
0
76
31
0
0
68
0.90
95866--95890
2
12.5
2
100
0
50
48
0
0
52
1.00
106731--106776
24
1.9
24
100
0
92
50
6
4
39
1.48
107016--107043
2
14.0
2
100
0
56
50
0
0
50
1.00
106961--107091
67
2.0
64
89
8
201
54
9
4
31
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107147--107281
52
2.6
51
87
4
193
50
12
7
29
1.67
107028--107579
188
2.9
189
94
2
972
48
13
7
29
1.71
107335--107468
50
2.7
49
89
2
205
50
12
7
29
1.68
108788--108830
3
14.7
3
85
4
61
60
2
0
37
1.10
109201--109367
91
1.8
92
89
3
266
24
19
13
41
1.88
108998--109693
331
2.1
332
90
2
1071
25
20
16
37
1.93
109524--109693
92
1.8
92
92
0
286
22
23
15
38
1.92
110708--110799
8
11.5
8
69
21
59
8
13
1
77
1.05
110709--110758
13
3.8
13
80
14
59
10
12
0
78
0.98
110726--110801
18
4.4
17
75
17
68
7
11
1
78
1.01
110714--110767
11
5.2
11
78
10
60
7
11
0
81
0.87
110700--110798
28
3.4
28
80
9
110
8
14
1
76
1.05
110700--110808
56
1.9
56
82
12
134
8
14
0
76
1.06

Tables:   1

The End!