genome.fa.s5366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005366.1 Hibiscus syriacus cultivar Beakdansim tig00012198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66383

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1447--1516	32	2.2	31	84	2	86	31	41	7	20	1.79
2466--2508	23	1.9	22	90	4	68	65	0	13	20	1.27
3568--3604	17	2.2	17	95	0	65	45	5	5	43	1.49
9019--9094	31	2.4	31	75	2	80	26	31	26	15	1.96
9965--9995	7	4.4	7	100	0	62	25	29	29	16	1.96
9985--10040	17	3.3	17	92	0	94	16	25	42	16	1.87
10054--10102	19	2.6	19	96	0	89	24	34	24	16	1.95
10057--10120	9	6.6	10	74	13	62	25	31	25	18	1.98
10057--10120	19	3.3	19	91	2	83	25	31	25	18	1.98
13930--13961	5	6.4	5	96	0	55	84	0	15	0	0.63
16180--16377	98	2.0	98	86	3	274	30	11	14	43	1.80
19008--19673	59	11.3	57	77	10	644	36	11	20	31	1.88
19008--19760	118	6.4	118	91	2	1036	36	10	21	31	1.87
19007--19779	59	13.1	59	73	14	496	37	10	20	31	1.88
19889--21072	43	27.2	43	86	3	1495	42	6	20	30	1.77
20668--20736	21	3.2	21	64	28	54	46	2	21	28	1.66
21465--21507	21	2.0	21	95	0	77	27	23	25	23	2.00
22895--22959	10	7.0	9	80	16	71	18	32	33	15	1.92
22899--22959	19	3.2	18	90	9	95	19	32	32	14	1.92
22908--22959	10	5.4	10	86	9	81	19	32	32	15	1.93
22950--22992	22	1.9	23	85	4	61	18	34	32	13	1.90
46870--47836	105	9.1	105	86	2	1242	21	24	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46870--47825	54	18.1	53	85	4	1114	21	24	19	34	1.97
46870--47832	426	2.3	420	90	3	1515	21	24	19	34	1.96
48204--48398	36	5.4	36	83	1	176	23	18	22	35	1.95
48260--48396	71	1.9	71	83	0	175	19	20	21	37	1.94
49703--49958	125	2.0	125	87	0	368	25	27	15	32	1.96
58061--58104	10	4.1	10	81	16	52	11	9	18	61	1.55
58061--58141	23	3.5	23	79	5	92	11	9	18	60	1.57

Tables:   1

The End!