Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005368.1 Hibiscus syriacus cultivar Beakdansim tig00012202_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98306

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1226--1274
23
2.1
23
85
7
64
57
12
2
28
1.46
4877--4905
5
5.8
5
100
0
58
82
0
0
17
0.66
11433--11481
23
2.1
23
85
7
64
57
14
2
26
1.48
12781--12815
16
2.2
16
94
0
61
37
0
20
42
1.52
17176--17237
31
2.2
28
78
16
65
30
27
22
19
1.98
19675--19881
103
2.0
103
90
0
324
26
28
12
32
1.93
26883--27330
222
2.0
222
95
0
799
30
15
18
35
1.92
28009--28037
2
14.5
2
100
0
58
48
0
0
51
1.00
38952--39052
42
2.4
42
89
0
148
30
12
25
30
1.93
39694--39751
21
2.8
21
84
5
73
27
15
24
32
1.95
39733--39781
23
2.2
22
86
10
73
28
24
22
24
1.99
39741--39785
23
2.0
23
100
0
90
22
26
24
26
2.00
45866--45940
22
3.5
21
69
20
66
30
10
28
30
1.90
45862--45962
42
2.4
42
91
0
157
29
10
29
29
1.91
46644--46692
23
2.2
22
82
10
64
28
22
24
24
1.99
46652--46696
23
2.0
23
90
0
72
24
22
26
26
2.00
47824--48303
46
10.5
46
86
1
606
43
12
20
23
1.86
56605--57092
46
10.6
46
85
0
589
42
13
19
25
1.87
58190--58228
18
2.1
19
85
4
53
43
10
2
43
1.52
58372--58504
32
4.2
32
71
10
101
40
2
9
48
1.47
58900--58938
20
2.0
20
84
0
51
56
0
0
43
0.99
59159--59236
40
2.0
40
100
0
156
56
12
11
19
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59844--59872
15
1.9
15
100
0
58
20
0
17
62
1.33
66594--66640
25
2.0
23
83
8
58
38
12
6
42
1.69
68207--68239
6
5.5
6
100
0
66
15
0
51
33
1.43
69075--69119
21
2.1
21
83
4
54
44
6
6
42
1.57
70015--70114
19
5.1
19
68
23
55
30
2
4
64
1.23
70079--70104
12
2.2
12
100
0
52
30
0
7
61
1.24
70185--70225
13
3.1
13
82
3
55
34
2
2
60
1.23
71357--71407
3
17.3
3
81
4
50
31
1
0
66
1.03
71351--71413
15
4.3
15
79
2
65
26
3
1
68
1.14
77358--77424
32
2.1
32
85
0
89
29
22
8
38
1.85
78174--78339
13
13.9
12
73
17
84
74
0
20
5
1.02
78197--78347
7
21.7
7
72
20
52
74
0
21
3
0.98
78190--78332
34
3.9
35
77
19
141
75
0
19
4
0.98
78174--78333
14
12.3
13
73
20
88
75
0
19
5
1.00
78190--78333
43
3.4
41
83
13
152
75
0
19
4
0.98
78197--78352
27
5.7
27
73
12
113
74
0
21
3
0.98
78199--78352
20
7.5
20
73
13
89
74
0
21
3
0.97
78681--78726
20
2.3
19
85
14
58
50
8
15
26
1.73
81112--81136
11
2.3
11
100
0
50
84
0
8
8
0.79
88632--88681
18
2.6
20
81
15
61
24
26
18
32
1.97
88717--88767
20
2.5
20
87
6
68
27
33
11
27
1.92

Tables:   1

The End!