Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005369.1 Hibiscus syriacus cultivar Beakdansim tig00012204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51948

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
291--340
20
2.4
20
83
6
55
18
8
34
40
1.79
365--439
21
3.6
21
100
0
150
18
24
29
28
1.98
376--436
13
5.5
13
65
34
52
19
22
29
27
1.98
495--546
20
2.6
20
87
0
68
28
26
26
17
1.97
5814--5843
14
2.1
14
93
0
51
50
6
0
43
1.28
5932--6089
7
22.7
7
73
16
64
20
0
31
48
1.50
5921--6089
14
12.1
14
77
8
139
21
0
30
47
1.51
5927--6089
21
7.8
21
75
8
136
20
0
30
48
1.50
5921--6027
55
1.9
55
88
0
160
19
0
30
49
1.49
6194--6239
21
2.2
21
84
7
58
43
34
0
21
1.53
8557--8624
33
2.1
33
83
5
84
33
2
7
55
1.42
10614--10700
3
29.0
3
100
0
174
66
0
0
33
0.92
11436--11913
231
2.1
231
84
0
607
25
16
22
36
1.94
11978--12033
24
2.3
24
100
0
112
28
12
17
41
1.86
12176--12234
31
1.9
31
92
0
100
18
18
18
44
1.88
12626--12761
25
5.4
25
77
12
120
41
1
21
35
1.62
12654--12761
51
2.2
50
86
3
155
42
0
23
33
1.60
13255--13455
107
1.9
107
83
4
262
33
15
12
38
1.85
16654--16782
66
2.0
66
87
3
188
23
23
19
34
1.97
17366--17399
18
1.9
17
88
5
50
29
0
11
58
1.33
21730--21784
24
2.4
21
78
21
58
60
1
1
36
1.18
21749--21827
15
4.6
18
68
21
53
64
1
1
32
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21818--21858
22
1.9
22
85
5
57
48
4
2
43
1.37
22036--22084
25
1.9
26
83
4
64
34
10
10
44
1.72
22272--22296
13
1.9
13
100
0
50
32
0
12
56
1.36
22556--22593
19
2.0
19
85
10
51
44
21
7
26
1.79
22984--23019
18
1.9
19
88
5
56
58
11
0
30
1.33
26625--26655
15
2.1
15
100
0
62
48
12
6
32
1.67
28452--28512
20
2.9
21
85
7
70
19
26
32
21
1.97
33895--33954
22
2.7
22
94
0
102
11
25
41
21
1.87
34186--34217
15
2.1
15
100
0
64
50
12
6
31
1.65
35703--35741
21
1.9
21
89
5
62
5
38
0
56
1.22

Tables:   1

The End!