genome.fa.s5372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005372.1 Hibiscus syriacus cultivar Beakdansim tig00012216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106940

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2813--2903	29	3.1	29	96	0	164	15	30	35	18	1.92
2954--3026	20	3.3	20	67	26	58	17	9	47	24	1.77
2954--3046	46	2.0	46	100	0	186	18	10	47	23	1.80
3554--3597	21	2.1	21	91	0	70	29	0	15	54	1.42
3574--3636	28	2.2	30	91	5	103	31	0	11	57	1.34
4141--4185	21	2.2	21	84	4	56	35	0	8	55	1.31
4446--4504	26	2.3	25	75	18	66	47	8	3	40	1.51
7383--7561	26	7.2	26	79	12	162	43	2	10	44	1.50
7328--7597	124	2.2	123	92	2	445	42	1	9	45	1.46
7386--7613	14	17.1	14	71	17	105	42	2	8	46	1.47
7566--7639	38	1.9	38	83	5	96	45	4	5	44	1.45
7821--7854	17	2.0	17	94	0	59	41	5	8	44	1.60
7767--7846	24	3.3	23	71	21	67	40	3	7	48	1.49
10003--10033	15	2.1	14	94	5	53	54	6	0	38	1.26
10008--10054	16	3.0	16	84	9	53	59	10	0	29	1.31
10095--10176	34	2.5	34	83	13	93	48	13	0	37	1.42
10216--10307	46	2.0	48	87	8	136	46	11	0	41	1.41
10216--10320	47	2.2	48	85	10	135	47	12	0	40	1.41
10288--10376	41	2.2	40	78	8	90	46	10	1	42	1.45
10893--11055	29	5.6	29	97	1	292	23	30	31	14	1.94
11074--11130	28	2.0	28	86	0	78	19	35	19	26	1.95
11138--11185	21	2.3	21	96	0	87	14	33	25	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11719--11752	18	1.9	17	88	5	50	32	29	20	17	1.96
21236--21264	14	2.1	14	100	0	58	51	6	0	41	1.28
24207--24232	2	13.0	2	100	0	52	50	0	0	50	1.00
36950--37011	3	21.3	3	74	12	58	56	0	0	43	0.99
36938--37015	20	3.7	21	77	19	83	55	0	0	44	0.99
36940--36994	9	5.7	9	78	16	56	56	0	0	43	0.99
36938--37008	12	5.8	12	76	18	58	54	0	0	45	0.99
37189--38083	75	11.9	75	96	0	1646	35	23	20	20	1.96
37189--38083	151	5.9	150	96	1	1646	35	23	20	20	1.96
37189--38083	226	4.0	226	96	1	1650	35	23	20	20	1.96
38100--38406	167	1.8	166	93	2	535	38	12	13	35	1.82
38921--38975	22	2.5	22	93	0	101	40	14	10	34	1.81
41469--42038	115	5.0	115	94	0	948	31	20	15	32	1.93
48517--48546	13	2.4	12	94	5	51	80	0	0	20	0.72
48520--48561	17	2.3	18	84	12	50	76	0	2	21	0.90
50826--50902	3	26.3	3	78	10	79	57	0	0	42	0.99
50814--50906	15	7.0	14	74	25	87	55	0	0	44	0.99
50814--50899	12	6.8	12	75	15	68	55	0	0	44	0.99
51867--51945	35	2.3	35	80	12	99	43	18	0	37	1.51
52197--52838	322	2.0	321	96	0	1185	35	14	18	31	1.91
54687--54778	32	2.9	32	77	9	91	35	27	14	22	1.93
55857--55895	20	2.0	20	84	0	51	17	7	5	69	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58624--58655	16	2.0	16	93	0	55	46	6	21	25	1.74
60550--60583	13	2.6	13	90	0	59	26	5	32	35	1.81
61799--61840	18	2.3	18	91	0	66	16	21	30	30	1.95
67379--67466	38	2.4	37	81	12	101	54	0	10	35	1.34
68051--68143	32	2.9	32	82	1	98	32	9	15	43	1.79
68149--68262	59	1.9	59	100	0	228	39	7	10	42	1.69
74470--74521	21	2.5	21	77	0	50	19	19	26	34	1.95
83452--83496	20	2.2	20	96	0	81	48	13	2	35	1.54
93424--93479	3	18.7	3	100	0	112	32	0	0	67	0.91
97872--97941	24	2.8	24	86	4	95	40	4	1	54	1.29
97872--97956	25	3.3	25	80	12	84	41	3	1	54	1.25
100777--100884	48	2.2	49	85	5	137	18	30	18	32	1.95

Tables:   1

The End!