genome.fa.s5376.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005376.1 Hibiscus syriacus cultivar Beakdansim tig00012257_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106490

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4331--4458	54	2.4	54	90	0	202	25	18	19	35	1.95
5108--5136	14	2.1	14	100	0	58	58	6	20	13	1.58
15514--15575	2	31.0	2	100	0	124	50	0	0	50	1.00
20729--20766	19	2.0	19	89	0	58	36	2	2	57	1.26
20672--20747	31	2.5	31	93	0	125	38	3	9	48	1.54
20755--20786	14	2.3	14	94	0	55	50	0	3	46	1.17
21879--21932	27	2.1	27	86	10	78	22	44	22	11	1.84
21926--22044	59	2.0	59	91	0	193	20	36	18	25	1.95
22766--22889	30	4.1	30	76	8	90	50	6	5	37	1.52
22781--22859	30	2.6	28	95	4	104	54	8	6	30	1.56
25376--25408	2	16.5	2	100	0	66	51	0	0	48	1.00
27644--27855	20	10.6	20	72	8	108	32	22	12	33	1.91
27644--27856	101	2.1	100	85	4	277	32	22	12	32	1.91
27788--27943	40	3.9	40	74	8	138	28	23	12	35	1.91
27888--27979	20	4.7	20	65	15	57	32	23	7	35	1.83
28884--28930	24	2.0	24	91	0	76	25	21	19	34	1.96
28889--28935	24	2.0	24	95	0	85	21	21	21	36	1.96
31486--31540	20	2.8	20	88	0	83	16	14	21	47	1.82
33035--33188	21	7.3	21	74	8	91	25	14	37	22	1.93
33054--33161	42	2.6	42	81	0	126	26	14	36	22	1.93
33322--33355	4	8.5	4	86	0	50	70	2	0	26	1.01
33476--33573	42	2.3	43	74	11	105	35	35	9	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33518--33636	63	1.9	63	81	10	145	32	32	10	23	1.90
33593--33638	21	2.2	21	88	0	65	39	28	13	19	1.89
33788--33827	18	2.2	18	90	0	62	17	20	32	30	1.95
35656--35726	24	3.2	23	72	22	71	30	16	26	25	1.97
37249--37286	12	3.2	12	92	0	67	7	15	50	26	1.72
37249--37303	24	2.3	24	90	0	83	12	14	47	25	1.80
37401--37449	13	3.8	13	94	2	82	12	16	55	16	1.70
37401--37449	25	1.9	25	91	4	80	12	16	55	16	1.70
37500--37524	6	4.2	6	100	0	50	0	64	16	20	1.30
37803--37859	23	2.5	23	94	0	96	19	22	26	31	1.98
39227--39277	20	2.5	20	81	6	59	45	23	15	15	1.85
39304--39342	20	2.0	20	94	0	69	17	12	17	51	1.76
39306--39349	20	2.2	20	87	0	61	18	13	18	50	1.79
40048--40088	20	2.0	20	90	0	64	24	4	56	14	1.58
40242--40308	20	3.3	20	85	4	82	20	14	23	40	1.90
40276--40314	20	2.0	20	94	0	69	20	10	30	38	1.86
40565--40602	18	2.1	18	85	9	51	42	0	2	55	1.14
42157--42206	25	2.0	25	88	0	73	30	24	26	20	1.98
48174--48544	180	2.1	179	97	1	697	38	19	11	29	1.87
50542--50617	40	1.9	38	86	5	107	39	11	13	35	1.81
50659--50691	14	2.4	14	94	0	57	15	15	15	54	1.71
51191--51220	10	3.0	10	95	0	51	6	10	23	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51553--51615	33	1.9	33	93	0	108	44	17	6	31	1.74
59153--59216	29	2.1	31	88	5	96	21	4	15	57	1.56
61503--61654	21	7.3	21	62	19	68	21	19	24	35	1.96
61497--61675	41	4.3	42	94	1	308	20	19	25	34	1.96
61522--61677	21	7.6	20	66	18	88	20	19	28	32	1.97
61755--61813	6	10.5	6	98	1	90	28	54	16	0	1.43
62585--62760	41	4.3	41	94	0	307	31	25	21	21	1.98
62585--62822	62	3.8	62	75	13	231	31	26	21	21	1.98
62649--62860	103	2.0	104	92	0	354	30	26	20	21	1.98
62752--62860	42	2.6	42	97	1	202	30	27	21	21	1.98
63162--63450	143	2.0	144	84	4	379	34	18	10	35	1.85
64786--64874	46	1.9	46	86	4	126	29	20	15	34	1.93
65482--65534	2	26.5	2	100	0	106	49	0	0	50	1.00
68201--68249	21	2.3	22	83	16	59	24	14	28	32	1.94
90143--90173	2	15.5	2	100	0	62	48	0	0	51	1.00
90976--91046	23	3.1	22	76	8	70	45	14	14	26	1.82
95587--95633	14	3.1	15	88	11	78	12	21	12	53	1.72
97391--97491	51	2.0	51	92	3	168	33	20	10	34	1.88
99721--99761	16	2.7	16	92	7	68	17	21	12	48	1.79
100513--100575	24	2.6	24	74	0	63	23	38	4	33	1.76
102206--102258	2	26.5	2	96	0	97	50	1	0	47	1.12

Tables:   1

The End!