genome.fa.s5377.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005377.1 Hibiscus syriacus cultivar Beakdansim tig00012268_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91069

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1227--1268	21	2.0	20	86	4	57	40	7	14	38	1.73
1903--1952	21	2.4	21	83	6	57	38	0	6	56	1.24
3754--3803	25	2.0	25	100	0	100	36	12	16	36	1.85
5328--5358	11	2.8	11	100	0	62	64	9	25	0	1.24
9880--9948	23	3.0	23	86	0	93	28	26	24	20	1.99
9964--10387	103	4.1	103	94	0	731	37	23	12	26	1.91
10259--10298	21	1.9	21	85	10	55	40	22	10	27	1.86
15706--15774	23	3.0	23	75	8	77	30	24	23	21	1.99
15793--16110	103	3.1	103	95	0	564	36	23	13	27	1.92
16877--17033	64	2.5	64	77	9	167	25	20	21	32	1.98
21719--21766	23	2.1	23	88	0	69	35	12	18	33	1.89
22493--22529	18	2.1	18	89	0	56	51	10	5	32	1.60
22733--22797	23	2.8	23	90	0	94	38	18	7	35	1.80
23152--23203	23	2.3	22	90	6	77	44	19	1	34	1.62
23162--23224	23	2.7	23	90	0	90	38	19	6	36	1.77
23580--23651	23	3.2	22	86	4	90	38	20	5	34	1.76
22735--24179	427	3.4	428	98	1	2826	37	13	8	40	1.74
24008--24059	23	2.3	22	90	6	77	44	19	1	34	1.62
24018--24080	23	2.7	23	90	0	90	38	19	6	36	1.77
26639--27125	184	2.7	184	97	0	895	34	15	14	35	1.88
27132--27176	22	2.0	22	86	0	63	40	11	8	40	1.72
28592--28678	3	29.0	3	77	0	84	24	34	5	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28592--28693	18	5.7	18	79	0	87	22	34	6	36	1.81
28600--28690	42	2.2	42	91	0	146	21	35	7	35	1.83
30146--31762	200	8.1	199	97	0	2996	32	15	15	37	1.88
31844--31888	19	2.4	19	92	0	72	57	8	2	31	1.41
33671--33736	33	2.0	33	87	0	96	24	45	1	28	1.62
35837--35889	24	2.2	24	83	6	63	26	7	13	52	1.66
36031--36077	20	2.4	19	79	10	58	19	17	8	55	1.67
36198--36242	19	2.3	20	85	14	67	17	17	11	53	1.72
38274--38326	20	2.6	21	81	6	72	24	20	15	39	1.91
38320--38365	21	2.2	21	92	0	74	19	21	28	30	1.98
39599--39711	21	5.5	21	81	4	122	33	23	23	20	1.97
39618--39711	40	2.3	41	90	3	145	35	22	22	20	1.96
47030--47094	3	20.7	3	87	9	94	63	1	1	33	1.13
47030--47097	19	3.7	19	88	5	97	63	1	1	33	1.13
48033--48084	21	2.3	23	80	6	63	38	11	0	50	1.39
49394--49450	18	3.0	19	87	12	82	45	12	14	28	1.80
52795--52851	18	3.0	19	87	12	82	45	12	14	28	1.80
57171--57211	11	3.7	12	81	15	52	36	0	0	63	0.95
62360--62384	2	12.5	2	100	0	50	48	0	0	52	1.00
66887--66919	14	2.4	14	100	0	66	39	6	15	39	1.72
67789--67822	16	2.1	16	88	0	50	50	0	2	47	1.16
67865--67898	16	2.0	18	88	11	54	26	2	5	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68370--68617	130	1.9	130	92	0	415	35	13	15	35	1.86
69014--69089	35	2.2	35	90	4	118	36	1	22	39	1.63
72050--72123	21	3.6	20	78	5	58	28	16	20	35	1.94
72113--72157	20	2.2	20	96	0	81	28	24	17	28	1.97
72113--72183	20	3.2	20	77	21	70	28	28	18	25	1.98
72677--72883	74	2.8	75	84	2	238	23	30	23	21	1.99
81331--81522	75	2.5	75	84	3	233	22	32	23	20	1.98
82799--82852	24	2.2	24	90	0	81	22	18	18	40	1.91
85273--85341	20	3.5	20	90	4	104	37	26	21	14	1.92
85333--85419	14	5.5	14	71	24	66	42	21	24	11	1.86
85346--85439	14	5.4	18	70	24	78	44	20	22	12	1.85
85333--85441	33	3.3	33	97	1	200	43	21	23	11	1.86
85481--85552	33	2.1	34	84	2	92	13	23	19	43	1.87
85657--85690	14	2.4	14	90	0	50	47	20	0	32	1.51
87657--87702	20	2.4	19	89	7	67	39	28	17	15	1.90
87766--87831	20	3.3	20	95	0	114	16	21	25	36	1.94
87748--87831	40	2.3	37	82	12	93	15	21	23	39	1.92
88180--88235	20	2.8	19	91	5	85	37	25	17	19	1.94
88278--88345	20	3.4	20	95	0	118	17	20	26	35	1.95
88260--88345	40	2.3	37	82	11	97	16	20	24	38	1.93
87408--88408	512	2.0	512	97	0	1885	33	16	16	32	1.92
90249--90344	20	4.8	20	79	2	77	45	19	17	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90317--90355	19	2.1	19	85	9	53	48	25	17	7	1.74
90926--90979	20	2.7	20	91	0	90	24	22	27	25	2.00
90998--91040	21	2.0	22	90	4	70	37	18	23	20	1.94

Tables:   1

The End!