genome.fa.s5379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005379.1 Hibiscus syriacus cultivar Beakdansim tig00012280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90577

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9408--9440	12	2.5	14	90	9	52	66	3	6	24	1.28
9434--9491	27	2.1	26	81	9	62	63	1	5	29	1.25
10121--10158	14	2.9	13	81	11	51	57	0	0	42	0.98
11557--11622	3	22.0	3	93	0	96	60	0	1	37	1.06
15811--15887	19	4.1	19	80	11	70	46	5	3	44	1.44
15825--15891	31	2.1	33	88	5	102	44	5	4	44	1.48
15983--16258	2	140.0	2	66	18	80	46	3	3	46	1.38
16117--16174	27	2.1	27	87	6	82	39	3	5	51	1.41
17991--18355	158	2.3	156	85	3	491	50	6	15	27	1.68
19175--19716	181	3.0	178	79	11	527	35	9	19	35	1.84
21847--21881	17	2.0	17	88	5	52	51	0	0	48	1.00
22199--22246	18	2.6	18	78	15	53	50	0	8	41	1.33
22837--22889	21	2.5	21	81	6	72	20	26	18	33	1.96
22864--22972	42	2.6	42	86	1	121	35	17	22	24	1.95
22879--22972	21	4.5	21	90	1	136	38	15	23	22	1.93
22879--22972	42	2.3	41	92	1	152	38	15	23	22	1.93
22898--23033	41	3.3	41	82	6	123	36	21	20	22	1.96
22961--23075	20	5.7	19	78	11	95	34	25	17	22	1.95
22958--23035	41	1.9	41	91	0	129	37	25	16	20	1.93
23515--23573	20	3.0	20	87	0	73	15	18	22	44	1.87
23710--23764	25	2.2	24	78	15	58	20	9	18	52	1.71
24892--24939	18	2.7	18	93	0	87	27	45	12	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25474--25594	19	6.6	19	77	14	74	42	22	20	14	1.87
25512--25594	19	4.6	19	79	14	113	45	20	20	13	1.84
25602--25680	33	2.4	33	91	0	122	15	20	18	45	1.85
25606--25664	14	3.9	14	74	20	55	13	18	20	47	1.82
25622--25680	19	3.4	18	75	22	63	16	20	16	45	1.85
25665--25719	20	2.8	20	91	2	85	16	27	23	32	1.96
26087--26175	42	2.1	42	85	0	115	21	42	14	21	1.88
27584--27622	14	2.8	14	84	0	51	35	0	17	46	1.49
27762--27845	19	4.4	19	96	0	159	47	15	20	16	1.82
27762--27864	38	2.8	36	90	7	131	47	16	21	14	1.82
27883--27978	20	4.8	20	96	0	156	16	22	21	38	1.93
28524--28635	20	5.6	20	82	6	118	21	20	25	32	1.98
28504--28641	41	3.4	41	79	6	154	21	19	23	34	1.96
28564--28659	41	2.3	41	83	3	113	21	19	22	35	1.96
28668--28720	21	2.5	22	81	6	74	33	18	26	20	1.96
30740--30887	43	3.4	43	83	0	179	31	14	25	29	1.94
33069--33146	31	2.5	31	79	8	95	44	14	5	35	1.67
33422--33472	23	2.3	22	82	3	57	35	3	0	60	1.15
41067--41149	29	2.8	29	92	1	139	43	9	14	32	1.78
45834--45916	29	2.8	29	92	1	139	43	9	14	32	1.78
53957--54015	20	3.0	20	84	0	64	42	20	18	18	1.90
54278--54321	22	2.0	22	95	0	79	18	15	45	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54510--54561	20	2.6	20	90	0	77	25	23	28	23	1.99
54570--54623	20	2.7	20	97	0	99	25	18	24	31	1.97
54489--54626	61	2.3	61	84	0	186	23	18	23	34	1.96
54612--54663	21	2.5	21	78	3	61	17	21	19	42	1.89
54694--54734	21	2.0	21	85	0	55	34	29	17	19	1.94
61628--61710	43	1.9	43	95	0	148	46	12	4	36	1.62
79086--79124	17	2.2	18	90	4	62	71	0	2	25	0.98
83524--83601	2	39.0	2	94	0	138	50	0	0	50	1.00
87849--87889	21	2.0	21	90	0	64	43	12	21	21	1.85

Tables:   1

The End!