genome.fa.s538.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000538.1 Hibiscus syriacus cultivar Beakdansim tig00001040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  296388

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609--869	80	3.3	81	87	4	368	31	22	10	36	1.88
834--1354	68	7.7	68	87	1	746	28	24	15	31	1.96
2075--2126	20	2.6	20	87	6	70	25	23	17	34	1.96
2686--2914	84	2.7	85	83	6	281	31	23	23	21	1.98
2967--3537	197	2.9	194	84	5	682	33	19	20	26	1.97
4377--4420	17	2.5	18	88	3	63	25	6	0	68	1.14
4470--4510	20	2.0	22	85	9	59	19	4	2	73	1.13
9755--9943	41	4.5	42	78	10	172	28	20	20	30	1.97
9752--9943	84	2.3	85	82	5	228	28	19	20	30	1.97
9760--9943	85	2.2	84	83	4	219	28	19	20	31	1.97
10338--10393	21	2.7	21	85	0	76	0	26	16	57	1.39
17045--17079	16	2.2	16	90	10	54	51	2	2	42	1.31
19434--19545	41	2.8	40	86	6	145	43	19	15	21	1.87
19472--19617	41	3.5	41	78	8	143	39	23	16	21	1.92
21969--22152	60	3.1	61	81	6	198	39	3	23	33	1.73
25821--26003	42	4.5	41	79	8	140	42	19	14	22	1.88
25859--26004	41	3.5	42	80	10	158	41	21	14	21	1.89
27566--27748	60	3.1	62	82	7	227	40	4	23	31	1.74
40756--40906	65	2.3	64	85	5	189	31	18	21	29	1.97
43542--43585	23	1.9	23	85	0	61	29	15	25	29	1.96
47443--47485	20	2.2	20	83	8	52	37	2	2	58	1.24
48950--49104	65	2.4	65	87	5	217	30	19	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57972--58489	199	2.6	200	86	5	696	32	21	19	26	1.97
69580--69614	18	1.9	18	88	0	52	28	17	0	54	1.43
80889--80927	19	2.1	18	85	4	51	76	0	5	17	0.96
82327--82621	118	2.5	118	86	3	400	25	19	13	41	1.88
82565--82621	19	2.9	20	67	15	55	19	26	10	43	1.83
85297--85870	134	4.3	134	82	5	665	28	15	22	33	1.95
85297--85870	268	2.1	268	87	3	807	28	15	22	33	1.95
92512--92557	13	3.5	13	84	0	65	28	19	19	32	1.96
93257--93287	14	2.2	14	100	0	62	54	0	6	38	1.26
96464--96638	91	1.9	90	86	4	244	35	13	14	36	1.85
98367--98527	85	1.9	85	83	2	207	32	17	20	29	1.95
98499--98550	13	4.0	13	76	0	50	32	17	21	28	1.96
111703--111741	18	2.2	18	100	0	78	48	15	15	20	1.81
121504--121588	42	2.0	42	100	0	170	30	16	27	25	1.97
123320--123407	20	4.2	20	70	22	65	15	28	29	26	1.96
127209--127248	21	1.9	21	85	10	55	35	10	2	52	1.48
131877--131907	16	1.9	16	93	0	53	22	0	22	54	1.44
133841--133874	14	2.5	14	90	4	52	79	0	20	0	0.73
140472--140525	3	18.0	3	92	0	90	62	3	0	33	1.12
141580--141632	3	17.0	3	81	14	63	33	0	0	66	0.92
141580--141632	19	2.8	19	83	11	65	33	0	0	66	0.92
147131--147162	15	2.1	15	94	0	55	25	18	9	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153181--153694	253	2.0	256	94	4	914	37	17	19	25	1.93
155271--155342	35	2.0	36	97	2	137	31	19	16	31	1.94
156162--156722	113	5.0	113	88	4	778	37	15	18	27	1.92
157058--157126	3	22.0	3	85	14	95	31	0	0	68	0.90
157058--157126	31	2.2	32	92	7	115	31	0	0	68	0.90
158559--158792	119	2.0	118	83	5	294	38	7	8	45	1.63
161471--161499	2	14.5	2	100	0	58	48	0	0	51	1.00
166134--166167	16	2.1	17	88	5	52	50	20	11	17	1.77
166712--166760	17	2.7	18	78	6	55	44	6	4	44	1.47
180120--180162	14	3.0	15	83	10	54	16	0	6	76	0.99
187822--188221	201	2.0	200	96	0	737	39	16	13	31	1.87
200389--200442	21	2.5	21	75	3	54	29	12	18	38	1.88
209526--209565	21	1.9	21	94	0	71	25	37	25	12	1.91
210367--210421	22	2.5	22	82	11	60	72	3	9	14	1.23
223408--223435	6	4.7	6	100	0	56	14	14	17	53	1.73
225407--225491	43	2.0	42	97	2	161	30	27	9	32	1.88
225422--225492	23	3.2	23	64	24	62	32	26	11	29	1.91
232750--232930	36	5.1	36	88	3	267	18	24	18	38	1.93
236523--236959	216	2.0	218	92	4	734	27	16	20	35	1.95
240210--240276	21	3.2	20	79	12	73	46	0	4	49	1.22
240206--240291	27	3.4	26	79	16	85	47	0	4	47	1.22
240228--240290	21	3.0	21	75	6	58	49	0	3	47	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250534--250589	14	4.0	14	92	0	76	10	12	19	57	1.64
250541--250589	14	3.5	14	94	0	80	12	10	16	61	1.57
251669--251703	16	2.4	14	90	9	52	14	8	14	62	1.53
251764--251796	16	2.1	16	100	0	66	6	12	24	57	1.57
252557--252598	21	2.0	22	90	4	68	42	19	14	23	1.87
252857--252920	30	2.1	30	100	0	128	29	12	23	34	1.92
255535--255681	20	7.7	20	75	11	137	16	23	21	39	1.92
255556--255622	34	2.0	34	90	0	107	16	23	22	37	1.94
255673--255725	22	2.4	22	87	0	79	16	18	30	33	1.94
255836--255895	6	10.5	6	98	1	99	30	51	18	0	1.46
256400--256448	6	8.5	6	97	2	84	0	16	53	30	1.43
256561--256613	22	2.4	22	80	0	70	37	20	16	24	1.93
256888--256936	25	2.0	25	100	0	98	57	8	8	26	1.56
261674--261737	22	3.0	21	86	4	92	26	23	23	26	2.00
263012--263042	16	1.9	16	100	0	62	45	9	19	25	1.81
268859--268885	12	2.2	12	100	0	54	37	0	14	48	1.45
271318--271458	29	4.8	29	91	0	228	32	13	11	42	1.80
275977--276058	29	2.8	29	92	1	128	32	14	10	41	1.81
284324--284357	18	1.9	18	94	5	61	14	23	44	17	1.86
291586--291622	17	2.2	17	100	0	74	10	21	48	18	1.78
291580--291648	24	2.8	24	76	17	70	15	24	42	17	1.88
293282--293307	11	2.4	11	100	0	52	46	0	15	38	1.46

Tables:   1

The End!