genome.fa.s5380.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005380.1 Hibiscus syriacus cultivar Beakdansim tig00012304_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106224

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5384--5426	3	13.7	3	80	9	50	60	4	0	34	1.17
5383--5426	19	2.3	19	88	11	72	59	4	0	36	1.18
5566--5738	79	2.1	82	88	3	253	21	15	26	36	1.93
6242--6446	54	3.8	54	88	3	288	31	18	19	31	1.95
7837--9108	90	14.5	87	80	7	945	28	21	18	31	1.97
8013--8159	76	1.9	76	90	0	231	23	24	18	34	1.96
8104--8234	42	3.0	43	67	25	110	25	19	21	34	1.96
8089--9146	354	3.0	355	83	4	1253	28	21	18	31	1.97
8089--9111	90	11.5	89	82	4	1066	28	21	18	31	1.97
9150--9610	62	7.5	62	77	5	414	35	14	22	26	1.93
9150--9609	127	3.7	125	80	7	492	35	14	22	26	1.93
9153--9609	244	1.9	248	83	5	604	35	14	22	26	1.93
11501--11713	98	2.2	95	88	4	302	33	15	15	35	1.89
16468--16499	15	2.2	15	94	5	57	65	0	3	31	1.08
16797--16868	37	1.9	38	85	2	101	66	2	1	29	1.14
17668--17697	11	2.6	12	89	10	53	6	16	0	76	0.99
19637--19765	43	3.0	44	80	3	127	43	16	18	21	1.88
19637--19748	44	2.6	43	82	4	118	43	17	17	20	1.88
27698--27767	35	2.0	35	85	2	95	37	18	17	27	1.93
33245--33400	75	2.1	75	87	2	224	37	15	21	26	1.93
33746--34018	59	4.6	59	92	1	449	32	11	19	36	1.87
33976--34064	45	2.0	46	84	2	117	34	13	17	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34371--34525	81	1.9	81	86	5	224	38	13	20	27	1.90
34650--34687	20	1.9	19	89	5	58	36	2	31	28	1.71
34690--34736	2	23.5	2	100	0	94	48	0	0	51	1.00
36496--36546	22	2.3	22	72	0	57	31	27	25	15	1.96
42924--42983	22	2.7	22	97	0	111	25	23	20	31	1.98
44824--44858	8	4.4	8	96	0	61	8	11	0	80	0.92
45814--45857	2	22.0	2	100	0	88	50	0	0	50	1.00
45815--45877	6	9.9	7	89	8	59	47	1	3	47	1.27
48667--48692	12	2.2	12	100	0	52	23	19	26	30	1.98
57386--57415	11	2.7	11	94	0	51	50	3	0	46	1.18
63294--63379	23	3.7	23	85	0	109	25	32	22	19	1.97
63314--63398	23	3.8	22	85	3	82	28	31	22	17	1.97
69367--69419	21	2.5	21	96	0	97	41	20	11	26	1.86
71224--71270	20	2.5	20	86	6	62	53	2	12	31	1.51
71765--71814	22	2.3	22	80	16	59	28	6	12	54	1.60
74439--76662	7	316.0	7	64	16	203	26	2	23	48	1.63
74708--74776	26	2.6	27	79	4	79	28	0	23	47	1.52
75023--75065	22	2.0	22	85	0	59	23	0	32	44	1.54
75158--75189	8	4.1	8	92	8	57	28	0	25	46	1.53
75158--75189	15	2.1	16	94	5	57	28	0	25	46	1.53
75318--75357	20	2.0	20	85	5	53	25	2	20	52	1.59
75375--75446	29	2.6	29	88	4	103	31	1	22	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75654--75717	22	2.9	22	84	6	76	26	0	17	56	1.41
76898--76949	14	3.8	14	80	12	63	23	1	25	50	1.60
76945--77010	29	2.3	29	80	12	75	21	0	19	59	1.38
77129--77189	15	4.2	15	73	10	56	22	0	26	50	1.49
77122--77189	22	3.1	22	82	2	75	23	0	25	51	1.48
78167--78313	66	2.2	66	82	2	188	28	17	22	31	1.96
79444--79559	22	5.2	23	72	20	77	18	0	27	54	1.44
79444--79545	44	2.3	44	76	20	106	17	0	27	54	1.43
79813--79854	16	2.6	16	84	0	57	28	2	2	66	1.16
80992--81025	18	1.9	18	94	5	61	23	5	23	47	1.73
83128--83181	15	3.5	15	80	9	72	24	31	27	16	1.96
83128--83196	32	2.2	32	91	0	111	24	30	27	17	1.97
83922--83969	7	7.4	7	80	15	59	56	0	10	33	1.34
83922--83978	26	2.2	26	87	9	80	56	0	10	33	1.34
83975--84003	6	4.8	6	100	0	58	34	0	0	65	0.93
84711--84756	2	23.0	2	100	0	92	50	0	0	50	1.00
87262--87297	19	1.9	18	88	5	54	75	2	0	22	0.94
87357--87454	45	2.2	45	84	0	133	23	33	14	28	1.94
88590--88634	17	2.6	17	89	6	65	31	2	0	66	1.04
88447--88732	136	2.1	135	81	7	321	42	6	6	45	1.55
91575--91623	8	7.0	7	84	13	66	16	16	10	57	1.65
91575--91623	13	3.5	13	84	15	71	16	16	10	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93921--93976	23	2.4	23	80	16	71	10	17	5	66	1.41
98482--98523	17	2.6	16	88	11	59	61	0	9	28	1.27
98491--98531	18	2.4	17	87	4	55	60	2	9	26	1.40
102474--102502	15	1.9	15	100	0	58	48	13	17	20	1.81
104187--104341	55	2.9	54	87	3	235	36	14	22	27	1.93
105428--105683	73	3.6	72	90	5	380	32	16	12	39	1.85
105688--105952	39	6.9	39	82	4	299	41	13	23	21	1.88
105688--105952	114	2.3	114	82	7	322	41	13	23	21	1.88
105931--105965	13	2.7	13	100	0	70	40	20	17	22	1.92
105896--105994	51	2.0	50	90	6	155	41	13	22	23	1.88

Tables:   1

The End!