Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005383.1 Hibiscus syriacus cultivar Beakdansim tig00012322_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64311

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2169--2212
19
2.2
20
84
11
56
38
6
6
47
1.57
4065--4131
15
4.7
15
71
17
52
49
0
2
47
1.16
4097--4153
3
19.0
3
82
7
71
61
0
0
38
0.96
4096--4153
12
4.8
12
87
12
84
60
0
0
39
0.97
4096--4165
24
2.9
24
83
8
81
62
1
0
35
1.04
4548--5202
228
2.9
229
89
5
934
26
17
14
40
1.89
6947--6977
9
3.3
9
95
4
53
25
0
0
74
0.82
9713--9739
14
1.9
14
100
0
54
92
0
7
0
0.38
11200--11247
2
24.5
2
95
4
89
50
0
0
50
1.00
11359--11414
28
2.0
29
82
10
71
53
7
1
37
1.39
11760--11971
43
4.9
43
80
3
212
26
14
23
35
1.93
12384--12455
21
3.4
21
74
0
63
2
33
18
45
1.63
21469--21561
42
2.2
42
82
0
123
27
30
16
25
1.96
23073--23223
41
3.7
40
81
6
160
33
18
12
35
1.89
23137--23398
42
6.3
40
71
16
144
29
19
14
36
1.91
23240--23394
82
1.9
83
89
4
242
29
20
14
34
1.93
24693--24745
3
18.0
3
84
3
72
64
1
0
33
1.05
28242--28278
18
2.1
18
90
10
58
16
0
13
70
1.17
29755--29810
16
3.3
16
81
13
76
19
0
25
55
1.43
29753--29824
35
1.9
37
89
10
112
19
0
26
54
1.45
29753--29824
19
3.9
19
82
12
96
19
0
26
54
1.45
31389--31444
10
5.7
10
75
12
53
44
3
0
51
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31397--31446
2
26.5
2
77
18
54
46
2
0
52
1.12
32594--32618
2
12.5
2
100
0
50
48
0
0
52
1.00
32699--32755
5
10.6
5
77
20
53
14
0
3
82
0.80
32694--32755
12
5.5
12
81
12
78
14
0
3
82
0.80
32694--32755
22
2.8
22
84
13
83
14
0
3
82
0.80
32788--32858
27
2.6
27
84
8
81
12
4
5
77
1.09
43226--43255
13
2.3
13
100
0
60
86
0
13
0
0.57
44194--44369
65
2.6
68
84
7
216
38
19
14
26
1.91
45387--45435
22
2.3
21
80
13
55
14
6
2
77
1.05
45407--45440
17
2.1
17
88
5
52
11
2
2
82
0.89
45498--45715
10
22.9
9
71
15
91
13
4
5
77
1.08
45504--45537
5
6.8
5
87
12
52
14
2
0
82
0.79
45512--45732
7
29.6
7
70
17
67
13
4
5
77
1.09
45548--45581
11
3.1
11
84
16
52
0
0
17
82
0.67
45548--45582
12
3.1
12
88
12
56
0
0
17
82
0.66
53286--53361
27
2.8
27
74
4
73
21
13
38
27
1.90
55063--55108
20
2.3
20
85
7
58
15
8
28
47
1.74
56814--56957
64
2.3
64
88
1
218
36
22
17
23
1.94
56817--56980
64
2.6
64
83
3
170
38
21
16
23
1.93
57001--57043
16
2.7
16
81
0
59
30
27
9
32
1.88

Tables:   1

The End!