genome.fa.s5385.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005385.1 Hibiscus syriacus cultivar Beakdansim tig00012334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63538

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871--904	15	2.1	17	89	10	54	64	5	11	17	1.45
3328--3369	11	3.6	11	90	6	57	76	0	21	2	0.90
4087--4115	15	1.9	15	100	0	58	48	13	17	20	1.81
5797--5952	56	2.9	55	85	5	237	35	14	23	27	1.93
7034--7293	73	3.6	72	92	2	423	32	15	11	39	1.84
7298--7597	39	7.7	39	85	1	386	41	12	24	21	1.88
7298--7597	78	3.8	78	90	1	467	41	12	24	21	1.88
9063--9125	26	2.2	29	78	18	71	42	0	1	55	1.09
9189--9217	2	14.5	2	100	0	58	48	0	0	51	1.00
9215--9265	17	2.8	18	81	18	61	27	1	1	68	1.11
9215--9260	19	2.4	18	79	10	56	23	2	2	71	1.08
11863--11954	30	3.1	30	85	6	132	48	5	15	30	1.67
15366--15453	24	3.7	24	84	0	113	25	17	21	36	1.94
17773--17955	97	2.0	87	85	10	240	39	9	14	36	1.78
25692--25722	2	15.5	2	100	0	62	51	0	0	48	1.00
25943--25973	1	31.0	1	100	0	62	0	100	0	0	0.00
26912--26963	27	1.9	27	92	0	86	40	1	7	50	1.42
26915--26972	27	2.2	26	84	6	73	44	1	6	46	1.40
27007--27062	29	1.9	29	96	0	103	35	3	23	37	1.72
27225--27272	2	24.0	2	100	0	96	50	0	0	50	1.00
29233--29277	22	2.0	22	100	0	90	31	13	31	24	1.93
36102--36350	43	5.8	43	90	4	301	31	24	28	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36102--36350	86	2.9	86	91	1	385	31	24	28	15	1.96
41218--41466	43	5.8	43	89	0	347	32	22	27	17	1.96
50689--50724	16	2.2	17	90	5	56	41	19	2	36	1.66
54565--54604	21	1.9	21	85	10	55	25	25	22	27	2.00
56910--57023	59	1.9	59	91	3	185	26	17	22	33	1.96
59165--59204	19	2.2	18	86	13	55	52	0	0	47	1.00
61954--62005	16	3.2	17	72	22	58	42	0	21	36	1.53

Tables:   1

The End!