Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005386.1 Hibiscus syriacus cultivar Beakdansim tig00012345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69584

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
425--476
17
2.9
17
83
13
61
42
38
5
13
1.68
447--552
18
6.4
17
74
19
82
44
39
7
8
1.63
483--541
6
9.8
6
77
0
55
49
42
5
3
1.41
481--576
24
4.0
24
72
11
63
44
38
7
9
1.64
858--1057
98
2.0
98
89
5
307
22
10
19
48
1.78
982--1173
83
2.3
82
85
9
275
26
10
16
46
1.80
4474--4515
16
2.6
16
88
0
66
38
16
26
19
1.92
6403--6433
2
15.5
2
100
0
62
51
0
0
48
1.00
6575--6617
18
2.4
18
88
7
61
72
2
4
20
1.14
8012--8145
42
3.1
42
67
16
103
20
23
25
31
1.98
8014--8231
86
2.5
86
93
1
366
19
23
26
31
1.98
8091--8232
42
3.3
42
66
21
123
19
21
26
33
1.97
16094--16160
5
12.8
5
76
20
66
77
0
7
14
0.97
16087--16182
23
4.0
23
75
11
68
75
1
10
13
1.11
16706--16744
13
3.0
13
92
0
60
64
5
7
23
1.40
16757--16787
12
2.6
12
89
0
53
64
0
25
9
1.24
18251--18437
75
2.5
75
81
3
207
30
5
14
49
1.67
19113--19160
25
2.0
24
83
4
60
43
2
0
54
1.12
25729--26121
200
2.0
198
88
3
583
33
18
13
34
1.90
38273--38311
18
2.1
19
85
9
53
20
33
5
41
1.74
42601--42638
19
2.0
20
89
5
60
23
10
21
44
1.83
45814--45880
31
2.2
31
86
0
89
16
16
16
50
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52835--52892
21
2.8
20
82
15
57
53
1
1
43
1.21
54555--54675
38
3.2
37
85
9
138
41
10
5
42
1.64
59301--59373
21
3.4
21
69
14
58
38
27
10
23
1.88
59287--59372
44
2.0
44
90
0
136
36
26
12
24
1.92
59496--59546
21
2.4
21
93
0
84
27
21
11
39
1.88
65936--65971
2
18.5
2
94
5
65
50
0
0
50
1.00
65939--65971
17
1.9
17
100
0
66
51
0
0
48
1.00
66112--66158
24
2.0
24
95
0
85
27
21
17
34
1.95
66341--66380
21
1.9
21
90
10
64
50
10
5
35
1.58
66812--66884
21
3.5
21
75
15
80
26
31
10
31
1.90
66813--66907
41
2.3
42
89
5
140
24
31
12
31
1.92

Tables:   1

The End!