genome.fa.s5387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005387.1 Hibiscus syriacus cultivar Beakdansim tig00012351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77565

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2392--3051	85	7.8	85	87	3	857	25	17	20	36	1.95
3082--3270	86	2.2	86	93	0	315	22	25	24	27	2.00
7325--7363	20	1.9	21	89	5	62	74	5	15	5	1.17
7564--7627	2	32.0	2	100	0	128	50	0	0	50	1.00
7758--7803	20	2.3	20	85	10	60	71	0	2	26	0.97
10522--10567	19	2.4	19	100	0	92	19	34	23	21	1.96
11033--11089	21	2.8	19	77	15	60	24	19	21	35	1.96
11818--11864	6	8.2	6	83	2	53	2	14	44	38	1.58
11955--12045	19	4.4	21	78	13	75	34	26	18	20	1.96
11976--12061	42	2.2	38	89	8	127	37	22	19	20	1.95
11976--12061	19	4.3	19	73	16	75	37	22	19	20	1.95
11946--12061	61	1.9	61	90	0	187	36	22	18	22	1.95
12062--12107	21	2.2	21	84	0	56	19	17	28	34	1.94
13420--13461	21	2.0	21	100	0	84	38	9	23	28	1.86
19369--19468	24	4.2	24	71	10	87	48	16	15	21	1.81
19362--19470	48	2.3	48	75	3	112	49	15	14	20	1.79
21711--21823	27	4.1	27	82	4	136	12	20	0	66	1.29
28363--28420	28	2.1	28	96	0	107	41	13	27	17	1.87
28612--28960	193	1.8	191	86	8	510	34	12	15	37	1.85
35842--35924	23	3.8	22	87	4	105	19	26	31	22	1.98
38754--38860	53	2.0	53	96	0	196	30	23	10	35	1.88
43496--43529	18	1.9	18	88	5	52	41	8	2	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43330--44070	137	5.4	137	80	5	755	42	13	13	31	1.83
44438--44480	14	3.1	14	80	3	52	69	0	6	23	1.12
44467--44509	18	2.4	19	80	11	54	62	2	4	30	1.28
44462--44510	17	2.8	17	84	3	53	61	2	8	28	1.36
46327--46361	3	11.7	3	93	0	61	65	0	0	34	0.93
46493--46525	17	1.9	17	100	0	66	33	6	24	36	1.80
46605--46794	97	2.0	97	83	4	240	30	18	14	36	1.91
46531--46925	216	1.8	216	83	3	526	27	20	14	37	1.91
46702--46999	119	2.5	119	89	1	440	25	22	14	37	1.93
48145--48173	15	2.0	15	93	6	51	0	17	0	82	0.66
51466--51526	23	2.7	23	84	5	79	57	3	19	19	1.54
63535--63938	139	2.9	138	81	2	456	42	14	12	30	1.82
65009--65062	22	2.5	22	82	8	65	42	3	20	33	1.70
67077--67296	43	5.2	41	72	18	118	75	2	6	15	1.13
67081--67261	22	8.0	22	70	10	96	75	3	7	13	1.14
67134--67441	18	16.8	17	66	24	107	73	2	5	18	1.15
67113--67238	43	3.0	42	75	17	120	75	3	7	14	1.14
67134--67449	4	73.8	4	66	24	53	73	2	5	18	1.16
67091--67398	52	5.8	51	72	18	143	73	3	5	17	1.17
67255--67326	7	9.9	7	73	19	58	68	1	2	27	1.12
67382--67436	20	2.8	20	79	15	71	78	0	7	14	0.96
67377--67447	21	3.6	21	69	21	71	77	0	7	15	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67377--67459	20	4.2	20	71	13	64	74	0	8	16	1.05
67907--67955	3	17.0	3	87	8	75	69	2	0	28	1.00
67907--67955	20	2.5	20	96	0	89	69	2	0	28	1.00
67906--67955	17	2.9	17	91	5	75	70	2	0	28	0.99
67906--67965	20	3.2	19	86	6	79	68	3	1	26	1.15
68861--68899	20	2.0	20	89	0	60	33	10	23	33	1.88
70111--70156	18	2.6	17	93	3	74	32	6	32	28	1.83
70699--70829	20	6.4	20	70	14	72	74	3	9	13	1.18
70723--70832	25	4.4	25	74	21	81	75	3	7	13	1.15
70745--70842	9	11.2	8	72	21	56	76	4	5	14	1.10
70776--70828	15	3.5	15	78	14	56	77	3	7	11	1.10
70817--70886	18	3.9	17	74	7	59	71	5	5	17	1.25
70962--71025	21	3.0	21	79	4	58	76	1	9	12	1.08
70902--71015	6	18.2	6	67	13	52	73	2	7	16	1.16
70963--71010	25	2.0	25	91	4	80	81	2	6	10	0.95
71472--71523	3	18.0	3	86	7	72	69	3	0	26	1.06
72431--72469	20	2.0	20	89	0	60	33	10	23	33	1.88

Tables:   1

The End!