Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005388.1 Hibiscus syriacus cultivar Beakdansim tig00012354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67944

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1271--1326
27
2.1
27
83
6
69
26
8
3
60
1.43
1629--1665
18
2.1
19
85
10
51
45
0
0
54
1.00
2487--2555
28
2.6
26
81
6
86
33
4
0
62
1.15
2504--2566
24
2.7
23
79
13
76
30
4
0
65
1.13
2550--2592
15
2.9
16
76
16
56
16
4
2
76
1.05
3019--3047
8
3.8
8
90
9
51
10
0
0
89
0.48
4659--4728
26
2.6
27
73
10
72
15
12
10
61
1.56
7417--7487
7
8.8
8
82
14
76
77
1
21
0
0.85
7431--7487
23
2.5
24
91
8
100
77
0
22
0
0.77
7940--8001
32
1.9
32
93
0
106
41
17
20
19
1.90
12593--12669
26
3.2
26
61
21
67
28
24
15
31
1.96
12490--13171
45
15.0
45
92
1
1049
24
23
19
33
1.97
12490--13171
91
7.5
91
91
1
1048
24
23
19
33
1.97
13380--13417
3
12.7
3
83
10
51
39
0
0
60
0.97
13378--13417
21
1.9
21
94
0
71
40
0
0
60
0.97
13383--13430
9
5.7
9
77
20
50
43
0
0
56
0.99
15005--15041
18
2.1
19
85
10
51
45
0
0
54
1.00
24913--25180
108
2.5
107
86
1
365
25
19
19
35
1.95
24913--25180
54
5.0
54
77
9
260
25
19
19
35
1.95
29277--29619
54
6.4
54
86
3
440
26
18
19
36
1.94
32194--32243
19
2.6
19
87
0
73
46
0
2
52
1.12
42372--42436
28
2.3
29
97
2
123
20
15
40
24
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45677--45714
19
2.0
19
94
0
67
23
15
34
26
1.95
56798--56847
26
1.9
26
87
0
73
34
6
24
36
1.80
57168--57214
22
2.1
22
100
0
94
40
4
8
46
1.54
64539--64680
43
3.4
41
80
7
142
29
13
19
37
1.90
64834--64911
41
1.9
40
89
2
120
48
6
7
37
1.57
65365--65403
13
3.0
13
92
0
69
25
23
20
30
1.98
65560--65589
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!