genome.fa.s5389.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005389.1 Hibiscus syriacus cultivar Beakdansim tig00012355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77511

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3249--3315	23	2.9	22	82	8	80	29	23	20	25	1.99
4805--4841	3	13.0	3	88	11	60	64	0	0	35	0.94
5180--5280	42	2.4	41	75	6	105	32	22	20	23	1.98
5447--5494	21	2.3	21	100	0	96	31	22	14	31	1.94
4990--5473	256	1.9	253	87	4	634	34	18	15	31	1.92
14030--14081	23	2.3	22	90	3	77	32	25	21	21	1.98
14075--14187	21	5.4	21	95	0	190	37	28	10	23	1.88
20971--21082	21	5.1	22	72	12	79	32	24	18	25	1.97
25688--25738	26	2.0	26	88	0	75	27	13	33	25	1.94
25697--25752	26	2.2	26	80	3	69	30	12	32	25	1.92
28379--28471	18	5.1	17	75	13	78	34	3	3	59	1.30
28378--28454	38	2.0	39	87	2	111	35	2	3	58	1.30
28426--28472	19	2.5	19	89	3	69	31	6	0	61	1.21
29049--29106	23	2.5	23	82	0	71	37	25	10	25	1.88
31804--31874	12	6.4	12	73	18	73	11	8	38	42	1.71
31814--31891	18	4.0	18	77	18	84	10	8	39	41	1.71
31804--31891	30	2.9	30	82	0	104	11	9	37	42	1.73
31804--31920	42	2.8	42	88	2	155	10	8	37	43	1.69
31814--31907	30	3.1	30	80	3	82	9	8	39	42	1.68
32155--32372	113	1.9	113	79	10	241	36	4	26	33	1.76
32735--32792	25	2.3	24	94	5	98	46	0	5	48	1.24
32735--32831	25	3.6	25	80	18	88	44	2	7	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32812--32853	18	2.3	18	87	0	57	42	7	2	47	1.43
32812--33300	20	23.6	20	64	24	94	43	4	6	46	1.49
32783--32866	33	2.6	32	81	7	82	40	5	7	46	1.56
32838--32876	13	3.0	13	88	0	60	35	2	5	56	1.35
32909--32957	15	3.4	14	88	5	53	46	2	4	46	1.33
32958--33031	25	2.9	26	84	8	89	44	4	5	45	1.45
32958--33033	27	2.9	27	81	15	88	44	3	5	46	1.44
32924--33307	9	45.0	8	65	22	67	43	4	6	45	1.49
32958--33153	25	7.8	25	69	14	84	41	5	6	46	1.53
32985--33102	39	3.0	39	74	16	100	41	5	6	46	1.52
33190--33268	40	2.0	40	85	5	106	46	1	6	45	1.36
32924--33307	7	60.0	6	67	20	67	43	4	6	45	1.49
33202--33300	40	2.4	41	81	6	112	44	2	7	46	1.42
33147--33338	60	3.1	60	79	11	176	46	3	5	44	1.43
33337--33412	20	3.7	20	75	13	73	38	5	10	46	1.61
33380--33447	29	2.3	29	94	0	127	41	4	10	44	1.58
43496--43643	74	2.0	74	100	0	296	27	17	31	24	1.97
45705--45768	22	2.9	22	97	0	119	48	4	1	45	1.32
45857--45957	2	51.5	2	74	14	86	45	0	2	50	1.23
45798--45896	20	5.5	18	72	13	55	43	3	7	46	1.46
46490--46589	48	2.1	48	92	0	164	32	19	18	31	1.95
50015--50063	13	3.8	13	79	17	57	48	2	2	46	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52651--52690	20	2.1	19	90	4	62	50	0	0	50	1.00
54036--54160	59	2.1	59	83	4	153	36	16	16	31	1.90
58510--58675	56	2.9	57	85	8	185	31	15	13	40	1.85
58510--58675	60	2.8	59	86	8	216	31	15	13	40	1.85
59930--59989	30	2.0	30	93	0	102	40	13	21	25	1.89
62169--62238	31	2.3	31	87	0	95	27	18	8	45	1.78
63019--63194	88	2.0	88	100	0	352	37	14	19	28	1.91
63228--63733	37	14.2	37	75	12	429	46	4	5	43	1.47
63265--63618	73	4.9	73	87	8	467	45	3	5	45	1.44
63633--63687	29	1.9	29	85	10	78	47	9	3	40	1.53
63228--63657	73	6.0	71	84	9	459	45	4	5	44	1.47
63757--63834	11	7.4	10	71	18	52	23	2	0	74	0.94
63758--63828	32	2.2	33	85	12	94	23	2	0	73	0.97
63782--63829	20	2.6	19	81	12	55	25	2	0	72	0.95
63755--63833	37	2.2	36	80	13	90	24	2	0	73	0.96
65056--65082	5	5.4	5	100	0	54	18	0	0	81	0.69
70281--71152	84	10.5	84	78	5	814	29	24	20	25	1.99
70245--71152	165	5.5	165	84	2	1153	29	24	20	25	1.99
70245--71127	333	2.7	329	86	2	1227	30	24	20	25	1.99
71456--71519	16	4.0	16	76	13	60	28	1	0	70	0.97
71465--71521	19	3.1	17	79	18	53	28	0	0	71	0.86
71567--71639	33	2.2	33	90	0	110	43	20	9	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72015--72039	4	6.2	4	100	0	50	24	0	0	76	0.80
74511--74576	21	3.2	21	93	2	107	40	21	13	24	1.89
74521--74580	21	2.9	21	97	0	111	45	20	11	23	1.83
75462--75495	16	2.1	16	94	0	59	29	11	17	41	1.85

Tables:   1

The End!