genome.fa.s5390.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005390.1 Hibiscus syriacus cultivar Beakdansim tig00012356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  273217

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148--177	14	2.1	15	93	6	53	16	0	33	50	1.46
443--471	13	2.1	14	93	6	51	44	0	6	48	1.29
6171--6258	17	5.1	18	70	21	55	38	0	2	59	1.10
6177--6265	34	2.7	33	77	10	85	39	0	2	58	1.11
8034--8127	21	4.5	21	92	5	129	18	35	26	20	1.95
8639--8735	33	2.9	34	85	3	124	56	4	2	37	1.30
8637--8742	34	3.2	32	82	8	122	55	4	1	37	1.32
9135--10908	128	13.9	128	95	1	3163	31	20	25	22	1.98
9135--10899	510	3.5	511	96	1	3213	31	20	25	22	1.98
9135--10899	383	4.6	383	95	1	3157	31	20	25	22	1.98
21753--21781	13	2.2	13	100	0	58	24	6	13	55	1.63
33220--33487	88	3.0	88	94	0	464	41	14	15	27	1.86
35998--36032	18	1.9	18	94	0	61	20	11	34	34	1.88
80702--80734	17	1.9	17	93	0	57	45	18	15	21	1.85
89350--89446	40	2.4	40	94	0	167	45	29	10	14	1.78
91793--91852	30	2.0	30	96	0	111	31	6	25	36	1.82
92552--92642	10	8.1	10	71	21	65	61	18	9	9	1.54
92554--92650	23	4.2	23	77	6	90	61	20	9	8	1.51
95088--95138	3	16.7	3	80	15	52	70	0	0	29	0.87
95091--95139	16	3.1	16	85	8	57	71	0	0	28	0.86
107764--107803	21	1.9	21	89	0	62	12	22	42	22	1.87
114255--114294	21	1.9	21	85	10	55	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115313--116113	399	2.0	399	96	0	1485	30	18	21	29	1.97
126720--127049	42	7.9	42	90	2	513	21	20	22	35	1.96
127907--128059	21	7.3	19	75	16	117	34	22	21	21	1.97
127907--128059	42	3.6	42	92	3	252	34	22	21	21	1.97
127914--128039	21	5.8	23	78	12	151	35	23	21	19	1.96
128070--128114	21	2.1	21	100	0	90	15	20	33	31	1.93
137654--137684	5	6.0	5	96	3	53	77	3	0	19	0.90
142207--142255	19	2.5	19	90	3	71	51	8	20	20	1.73
144072--144113	22	2.0	22	85	4	59	52	0	0	47	1.00
146252--146290	2	20.0	2	89	5	62	46	0	0	53	1.00
153404--153493	44	2.0	44	93	0	153	28	20	7	43	1.79
156141--156187	20	2.3	20	78	10	51	10	12	4	72	1.25
157780--157806	3	9.0	3	100	0	54	33	0	0	66	0.92
160595--160619	2	12.5	2	100	0	50	48	0	0	52	1.00
161382--161507	59	2.1	59	81	5	148	42	14	9	34	1.78
178377--178533	77	2.0	77	86	8	221	46	5	6	41	1.53
178495--178519	12	2.1	12	100	0	50	52	0	0	48	1.00
179858--179913	20	2.8	20	86	2	76	39	21	17	21	1.93
179876--179966	19	4.7	19	84	9	112	37	20	13	28	1.90
180716--180743	12	2.3	12	100	0	56	53	32	0	14	1.41
180869--180922	24	2.2	24	93	0	90	22	16	18	42	1.89
183182--183217	18	2.0	18	88	0	54	55	22	2	19	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183536--183657	20	6.1	20	93	0	199	19	21	21	37	1.94
183745--183796	25	2.1	25	96	0	95	28	7	17	46	1.75
184184--184220	18	2.1	18	89	0	56	32	5	10	51	1.60
184176--184228	24	2.2	24	86	0	70	35	3	13	47	1.61
184520--184606	39	2.2	39	91	0	147	47	21	13	17	1.82
184813--184886	20	3.8	20	74	3	78	22	20	18	37	1.94
184957--185048	33	2.6	33	81	8	94	52	15	1	31	1.50
186481--186530	21	2.4	21	77	12	57	26	16	34	24	1.95
188970--189016	22	2.1	22	96	0	85	21	14	42	21	1.88
191099--191146	14	3.4	14	77	8	53	58	20	2	18	1.49
202595--202719	42	3.0	42	96	0	232	41	8	25	24	1.82
203341--203369	2	14.5	2	100	0	58	48	0	0	51	1.00
206181--206218	2	20.0	2	84	10	53	50	0	0	50	1.00
206176--206207	16	2.0	16	93	0	55	46	0	3	50	1.17
206780--206808	2	14.5	2	100	0	58	51	0	0	48	1.00
207959--207985	13	2.1	13	100	0	54	44	7	22	25	1.79
209832--209872	16	2.5	17	84	4	57	48	2	0	48	1.14
210809--211354	271	2.0	271	99	0	1074	26	18	27	27	1.98
211679--211709	2	15.5	2	100	0	62	51	0	0	48	1.00
215406--215439	2	17.0	2	100	0	68	50	0	0	50	1.00
215432--215532	31	3.1	31	63	18	78	40	11	1	45	1.52
222033--222605	257	2.3	248	86	9	777	28	11	18	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223002--223038	18	2.1	18	89	0	56	32	16	2	48	1.60
223356--223415	2	30.5	2	93	3	104	0	46	0	53	1.00
230478--230532	27	2.0	27	89	0	83	27	29	7	36	1.84
231801--232275	242	2.0	243	80	1	549	39	17	15	26	1.90
234686--234796	32	3.5	33	94	0	165	50	8	27	14	1.70
238797--239441	212	2.9	211	80	10	593	38	15	17	27	1.90
238996--239686	238	2.9	236	88	2	967	37	15	17	29	1.91
239687--240460	239	3.3	235	81	7	898	39	15	15	29	1.88
240388--240550	83	1.9	86	93	3	287	49	8	12	28	1.70
245746--245836	46	2.0	46	91	0	146	32	10	12	43	1.77
246164--246722	284	2.0	274	96	3	1019	37	19	15	27	1.92
256994--257031	20	2.0	20	84	5	51	36	7	5	50	1.54
257422--257460	20	2.0	20	85	10	53	66	0	0	33	0.92
258431--258480	27	1.9	27	88	8	77	42	4	0	54	1.19
258420--258487	27	2.5	26	81	13	75	38	2	0	58	1.13
269922--269970	23	2.1	24	96	3	91	34	36	10	18	1.85

Tables:   1

The End!